Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC25.02■■□□□ 1.6
USP48Q86UV5 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
USP48Q86UV5 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
USP48Q86UV5 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC25.02■■□□□ 1.6
USP48Q86UV5 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
USP48Q86UV5 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
USP48Q86UV5 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC25.01■■□□□ 1.59
USP48Q86UV5 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
USP48Q86UV5 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC25.01■■□□□ 1.59
USP48Q86UV5 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC25.01■■□□□ 1.59
USP48Q86UV5 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
USP48Q86UV5 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC25.01■■□□□ 1.59
USP48Q86UV5 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC25.01■■□□□ 1.59
USP48Q86UV5 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC25.01■■□□□ 1.59
USP48Q86UV5 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC25.01■■□□□ 1.59
USP48Q86UV5 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC25.01■■□□□ 1.59
USP48Q86UV5 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
USP48Q86UV5 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC25.01■■□□□ 1.59
USP48Q86UV5 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC25.01■■□□□ 1.59
USP48Q86UV5 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC25.01■■□□□ 1.59
USP48Q86UV5 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
USP48Q86UV5 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
USP48Q86UV5 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
USP48Q86UV5 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC25■■□□□ 1.59
USP48Q86UV5 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
USP48Q86UV5 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
USP48Q86UV5 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC25■■□□□ 1.59
USP48Q86UV5 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC25■■□□□ 1.59
USP48Q86UV5 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC25■■□□□ 1.59
USP48Q86UV5 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC25■■□□□ 1.59
USP48Q86UV5 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC25■■□□□ 1.59
USP48Q86UV5 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
USP48Q86UV5 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC25■■□□□ 1.59
USP48Q86UV5 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
USP48Q86UV5 AC092368.3-202ENST00000574180 1591 ntBASIC25■■□□□ 1.59
USP48Q86UV5 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
USP48Q86UV5 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
USP48Q86UV5 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC25■■□□□ 1.59
USP48Q86UV5 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC24.99■■□□□ 1.59
USP48Q86UV5 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
USP48Q86UV5 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
USP48Q86UV5 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
USP48Q86UV5 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
USP48Q86UV5 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC24.99■■□□□ 1.59
USP48Q86UV5 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC24.99■■□□□ 1.59
USP48Q86UV5 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC24.99■■□□□ 1.59
USP48Q86UV5 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
USP48Q86UV5 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
USP48Q86UV5 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC24.99■■□□□ 1.59
USP48Q86UV5 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC24.99■■□□□ 1.59
USP48Q86UV5 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC24.99■■□□□ 1.59
USP48Q86UV5 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
USP48Q86UV5 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
USP48Q86UV5 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC24.98■■□□□ 1.59
USP48Q86UV5 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
USP48Q86UV5 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC24.98■■□□□ 1.59
USP48Q86UV5 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
USP48Q86UV5 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
USP48Q86UV5 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
USP48Q86UV5 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC24.98■■□□□ 1.59
USP48Q86UV5 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC24.98■■□□□ 1.59
USP48Q86UV5 BX088651.1-201ENST00000540551 451 ntBASIC24.98■■□□□ 1.59
USP48Q86UV5 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC24.98■■□□□ 1.59
USP48Q86UV5 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
USP48Q86UV5 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
USP48Q86UV5 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC24.97■■□□□ 1.59
USP48Q86UV5 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC24.97■■□□□ 1.59
USP48Q86UV5 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC24.97■■□□□ 1.59
USP48Q86UV5 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
USP48Q86UV5 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC24.97■■□□□ 1.59
USP48Q86UV5 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
USP48Q86UV5 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
USP48Q86UV5 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC24.97■■□□□ 1.59
USP48Q86UV5 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC24.97■■□□□ 1.59
USP48Q86UV5 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
USP48Q86UV5 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
USP48Q86UV5 FAM21FP-204ENST00000608637 956 ntBASIC24.97■■□□□ 1.59
USP48Q86UV5 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
USP48Q86UV5 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
USP48Q86UV5 AF106564.1-201ENST00000607058 2553 ntBASIC24.97■■□□□ 1.59
USP48Q86UV5 Z98882.1-201ENST00000622160 2253 ntBASIC24.96■■□□□ 1.59
USP48Q86UV5 MDFI-202ENST00000373050 809 ntTSL 2 BASIC24.96■■□□□ 1.59
USP48Q86UV5 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC24.96■■□□□ 1.59
USP48Q86UV5 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC24.96■■□□□ 1.59
USP48Q86UV5 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC24.96■■□□□ 1.59
USP48Q86UV5 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC24.96■■□□□ 1.59
USP48Q86UV5 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
USP48Q86UV5 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC24.96■■□□□ 1.59
USP48Q86UV5 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC24.96■■□□□ 1.59
USP48Q86UV5 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC24.96■■□□□ 1.59
USP48Q86UV5 AC100791.3-201ENST00000617619 330 ntBASIC24.96■■□□□ 1.59
USP48Q86UV5 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC24.96■■□□□ 1.59
USP48Q86UV5 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC24.96■■□□□ 1.59
USP48Q86UV5 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
USP48Q86UV5 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
USP48Q86UV5 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC24.95■■□□□ 1.59
USP48Q86UV5 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
USP48Q86UV5 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC24.95■■□□□ 1.59
USP48Q86UV5 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
USP48Q86UV5 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC24.95■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms