Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
USP54Q70EL1 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
USP54Q70EL1 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC27.49■■□□□ 1.99
USP54Q70EL1 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC27.49■■□□□ 1.99
USP54Q70EL1 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC27.49■■□□□ 1.99
USP54Q70EL1 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC27.49■■□□□ 1.99
USP54Q70EL1 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC27.49■■□□□ 1.99
USP54Q70EL1 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
USP54Q70EL1 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC27.49■■□□□ 1.99
USP54Q70EL1 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC27.49■■□□□ 1.99
USP54Q70EL1 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC27.49■■□□□ 1.99
USP54Q70EL1 GRAP-204ENST00000573099 846 ntTSL 3 BASIC27.49■■□□□ 1.99
USP54Q70EL1 AC110285.5-201ENST00000611501 352 ntBASIC27.49■■□□□ 1.99
USP54Q70EL1 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
USP54Q70EL1 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
USP54Q70EL1 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC27.49■■□□□ 1.99
USP54Q70EL1 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC27.49■■□□□ 1.99
USP54Q70EL1 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
USP54Q70EL1 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
USP54Q70EL1 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
USP54Q70EL1 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC27.49■■□□□ 1.99
USP54Q70EL1 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC27.49■■□□□ 1.99
USP54Q70EL1 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC27.49■■□□□ 1.99
USP54Q70EL1 AC023632.3-201ENST00000521633 145 ntBASIC27.49■■□□□ 1.99
USP54Q70EL1 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC27.49■■□□□ 1.99
USP54Q70EL1 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC27.49■■□□□ 1.99
USP54Q70EL1 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
USP54Q70EL1 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC27.49■■□□□ 1.99
USP54Q70EL1 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC27.49■■□□□ 1.99
USP54Q70EL1 AC244015.2-201ENST00000616358 1861 ntBASIC27.49■■□□□ 1.99
USP54Q70EL1 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
USP54Q70EL1 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC27.48■■□□□ 1.99
USP54Q70EL1 LSR-203ENST00000360798 1963 ntTSL 2 BASIC27.48■■□□□ 1.99
USP54Q70EL1 PTBP1P-201ENST00000554374 1601 ntBASIC27.48■■□□□ 1.99
USP54Q70EL1 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC27.48■■□□□ 1.99
USP54Q70EL1 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC27.48■■□□□ 1.99
USP54Q70EL1 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC27.48■■□□□ 1.99
USP54Q70EL1 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC27.48■■□□□ 1.99
USP54Q70EL1 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
USP54Q70EL1 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
USP54Q70EL1 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC27.48■■□□□ 1.99
USP54Q70EL1 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC27.48■■□□□ 1.99
USP54Q70EL1 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC27.47■■□□□ 1.99
USP54Q70EL1 KRT8P36-201ENST00000489121 1440 ntBASIC27.47■■□□□ 1.99
USP54Q70EL1 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
USP54Q70EL1 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC27.47■■□□□ 1.99
USP54Q70EL1 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC27.47■■□□□ 1.99
USP54Q70EL1 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC27.47■■□□□ 1.99
USP54Q70EL1 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC27.47■■□□□ 1.99
USP54Q70EL1 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC27.47■■□□□ 1.99
USP54Q70EL1 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
USP54Q70EL1 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC27.47■■□□□ 1.99
USP54Q70EL1 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC27.47■■□□□ 1.99
USP54Q70EL1 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC27.46■■□□□ 1.99
USP54Q70EL1 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
USP54Q70EL1 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC27.46■■□□□ 1.99
USP54Q70EL1 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC27.46■■□□□ 1.99
USP54Q70EL1 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC27.46■■□□□ 1.99
USP54Q70EL1 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC27.46■■□□□ 1.99
USP54Q70EL1 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC27.46■■□□□ 1.99
USP54Q70EL1 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC27.46■■□□□ 1.99
USP54Q70EL1 AC006557.6-201ENST00000623071 864 ntBASIC27.46■■□□□ 1.99
USP54Q70EL1 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
USP54Q70EL1 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC27.46■■□□□ 1.99
USP54Q70EL1 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
USP54Q70EL1 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC27.46■■□□□ 1.99
USP54Q70EL1 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
USP54Q70EL1 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC27.46■■□□□ 1.99
USP54Q70EL1 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC27.46■■□□□ 1.99
USP54Q70EL1 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC27.46■■□□□ 1.99
USP54Q70EL1 AL121829.2-201ENST00000620908 328 ntBASIC27.46■■□□□ 1.99
USP54Q70EL1 AL121906.2-201ENST00000621597 723 ntBASIC27.46■■□□□ 1.99
USP54Q70EL1 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC27.46■■□□□ 1.99
USP54Q70EL1 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC27.46■■□□□ 1.99
USP54Q70EL1 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
USP54Q70EL1 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC27.45■■□□□ 1.99
USP54Q70EL1 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC27.45■■□□□ 1.99
USP54Q70EL1 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC27.45■■□□□ 1.99
USP54Q70EL1 AC011484.1-201ENST00000377652 1995 ntBASIC27.45■■□□□ 1.98
USP54Q70EL1 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
USP54Q70EL1 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC27.45■■□□□ 1.98
USP54Q70EL1 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC27.45■■□□□ 1.98
USP54Q70EL1 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC27.45■■□□□ 1.98
USP54Q70EL1 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC27.44■■□□□ 1.98
USP54Q70EL1 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
USP54Q70EL1 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
USP54Q70EL1 PENK-204ENST00000518770 863 ntTSL 2 BASIC27.44■■□□□ 1.98
USP54Q70EL1 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC27.44■■□□□ 1.98
USP54Q70EL1 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC27.44■■□□□ 1.98
USP54Q70EL1 LINC01023-201ENST00000606054 436 ntBASIC27.44■■□□□ 1.98
USP54Q70EL1 PALM-207ENST00000590161 2137 ntTSL 4 BASIC27.44■■□□□ 1.98
USP54Q70EL1 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
USP54Q70EL1 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC27.44■■□□□ 1.98
USP54Q70EL1 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
USP54Q70EL1 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC27.43■■□□□ 1.98
USP54Q70EL1 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC27.43■■□□□ 1.98
USP54Q70EL1 AL135905.2-201ENST00000584934 1404 ntBASIC27.43■■□□□ 1.98
USP54Q70EL1 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
USP54Q70EL1 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC27.43■■□□□ 1.98
USP54Q70EL1 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms