Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CSPG4Q6UVK1 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CSPG4Q6UVK1 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CSPG4Q6UVK1 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CSPG4Q6UVK1 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CSPG4Q6UVK1 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CSPG4Q6UVK1 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CSPG4Q6UVK1 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC16.9■□□□□ 0.3
CSPG4Q6UVK1 AC113347.1-201ENST00000413321 391 ntBASIC16.9■□□□□ 0.3
CSPG4Q6UVK1 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC16.9■□□□□ 0.3
CSPG4Q6UVK1 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
CSPG4Q6UVK1 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CSPG4Q6UVK1 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CSPG4Q6UVK1 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CSPG4Q6UVK1 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CSPG4Q6UVK1 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CSPG4Q6UVK1 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CSPG4Q6UVK1 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CSPG4Q6UVK1 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
CSPG4Q6UVK1 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CSPG4Q6UVK1 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC16.89■□□□□ 0.29
CSPG4Q6UVK1 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
CSPG4Q6UVK1 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CSPG4Q6UVK1 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC16.89■□□□□ 0.29
CSPG4Q6UVK1 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CSPG4Q6UVK1 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC16.89■□□□□ 0.29
CSPG4Q6UVK1 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CSPG4Q6UVK1 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CSPG4Q6UVK1 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CSPG4Q6UVK1 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CSPG4Q6UVK1 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CSPG4Q6UVK1 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CSPG4Q6UVK1 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC16.88■□□□□ 0.29
CSPG4Q6UVK1 MIR6786-201ENST00000616843 113 ntBASIC16.88■□□□□ 0.29
CSPG4Q6UVK1 GLDC-219ENST00000640208 420 ntTSL 2 BASIC16.88■□□□□ 0.29
CSPG4Q6UVK1 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CSPG4Q6UVK1 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC16.88■□□□□ 0.29
CSPG4Q6UVK1 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CSPG4Q6UVK1 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
CSPG4Q6UVK1 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC16.88■□□□□ 0.29
CSPG4Q6UVK1 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC16.88■□□□□ 0.29
CSPG4Q6UVK1 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
CSPG4Q6UVK1 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CSPG4Q6UVK1 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
CSPG4Q6UVK1 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CSPG4Q6UVK1 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC16.88■□□□□ 0.29
CSPG4Q6UVK1 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC16.88■□□□□ 0.29
CSPG4Q6UVK1 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC16.88■□□□□ 0.29
CSPG4Q6UVK1 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC16.88■□□□□ 0.29
CSPG4Q6UVK1 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CSPG4Q6UVK1 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
CSPG4Q6UVK1 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC16.88■□□□□ 0.29
CSPG4Q6UVK1 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CSPG4Q6UVK1 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CSPG4Q6UVK1 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC16.88■□□□□ 0.29
CSPG4Q6UVK1 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CSPG4Q6UVK1 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CSPG4Q6UVK1 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CSPG4Q6UVK1 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
CSPG4Q6UVK1 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC16.87■□□□□ 0.29
CSPG4Q6UVK1 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC16.87■□□□□ 0.29
CSPG4Q6UVK1 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC16.87■□□□□ 0.29
CSPG4Q6UVK1 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC16.87■□□□□ 0.29
CSPG4Q6UVK1 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CSPG4Q6UVK1 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CSPG4Q6UVK1 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CSPG4Q6UVK1 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC16.87■□□□□ 0.29
CSPG4Q6UVK1 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC16.87■□□□□ 0.29
CSPG4Q6UVK1 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CSPG4Q6UVK1 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CSPG4Q6UVK1 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC16.87■□□□□ 0.29
CSPG4Q6UVK1 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CSPG4Q6UVK1 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC16.87■□□□□ 0.29
CSPG4Q6UVK1 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC16.87■□□□□ 0.29
CSPG4Q6UVK1 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
CSPG4Q6UVK1 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
CSPG4Q6UVK1 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CSPG4Q6UVK1 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CSPG4Q6UVK1 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CSPG4Q6UVK1 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CSPG4Q6UVK1 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CSPG4Q6UVK1 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CSPG4Q6UVK1 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC16.86■□□□□ 0.29
CSPG4Q6UVK1 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC16.86■□□□□ 0.29
CSPG4Q6UVK1 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC16.86■□□□□ 0.29
CSPG4Q6UVK1 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC16.86■□□□□ 0.29
CSPG4Q6UVK1 AC005829.2-201ENST00000571422 1056 ntBASIC16.86■□□□□ 0.29
CSPG4Q6UVK1 RBM42-202ENST00000586618 771 ntTSL 3 BASIC16.86■□□□□ 0.29
CSPG4Q6UVK1 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC16.86■□□□□ 0.29
CSPG4Q6UVK1 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC16.86■□□□□ 0.29
CSPG4Q6UVK1 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC16.86■□□□□ 0.29
CSPG4Q6UVK1 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CSPG4Q6UVK1 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CSPG4Q6UVK1 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CSPG4Q6UVK1 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC16.86■□□□□ 0.29
CSPG4Q6UVK1 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
CSPG4Q6UVK1 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CSPG4Q6UVK1 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CSPG4Q6UVK1 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC16.86■□□□□ 0.29
CSPG4Q6UVK1 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms