Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 HSCB-202ENST00000398941 955 ntTSL 2 BASIC20.27■□□□□ 0.84
ZNF549Q6P9A3 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF549Q6P9A3 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF549Q6P9A3 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC20.27■□□□□ 0.84
ZNF549Q6P9A3 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF549Q6P9A3 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.27■□□□□ 0.84
ZNF549Q6P9A3 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC20.27■□□□□ 0.84
ZNF549Q6P9A3 WWOX-218ENST00000627394 894 ntTSL 5 BASIC20.27■□□□□ 0.84
ZNF549Q6P9A3 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.27■□□□□ 0.84
ZNF549Q6P9A3 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC20.27■□□□□ 0.84
ZNF549Q6P9A3 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF549Q6P9A3 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF549Q6P9A3 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.27■□□□□ 0.83
ZNF549Q6P9A3 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
ZNF549Q6P9A3 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
ZNF549Q6P9A3 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
ZNF549Q6P9A3 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.83
ZNF549Q6P9A3 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
ZNF549Q6P9A3 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.26■□□□□ 0.83
ZNF549Q6P9A3 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
ZNF549Q6P9A3 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
ZNF549Q6P9A3 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ZNF549Q6P9A3 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
ZNF549Q6P9A3 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
ZNF549Q6P9A3 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ZNF549Q6P9A3 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ZNF549Q6P9A3 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC20.26■□□□□ 0.83
ZNF549Q6P9A3 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.26■□□□□ 0.83
ZNF549Q6P9A3 GXYLT1P2-201ENST00000433312 1230 ntBASIC20.26■□□□□ 0.83
ZNF549Q6P9A3 AL162430.1-201ENST00000480705 870 ntBASIC20.26■□□□□ 0.83
ZNF549Q6P9A3 MFSD11-216ENST00000590393 1141 ntBASIC20.26■□□□□ 0.83
ZNF549Q6P9A3 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
ZNF549Q6P9A3 ANKRD20A6P-201ENST00000618763 204 ntBASIC20.26■□□□□ 0.83
ZNF549Q6P9A3 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
ZNF549Q6P9A3 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
ZNF549Q6P9A3 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
ZNF549Q6P9A3 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ZNF549Q6P9A3 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
ZNF549Q6P9A3 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
ZNF549Q6P9A3 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.25■□□□□ 0.83
ZNF549Q6P9A3 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.25■□□□□ 0.83
ZNF549Q6P9A3 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
ZNF549Q6P9A3 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
ZNF549Q6P9A3 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.25■□□□□ 0.83
ZNF549Q6P9A3 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
ZNF549Q6P9A3 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
ZNF549Q6P9A3 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
ZNF549Q6P9A3 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
ZNF549Q6P9A3 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
ZNF549Q6P9A3 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.25■□□□□ 0.83
ZNF549Q6P9A3 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.25■□□□□ 0.83
ZNF549Q6P9A3 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
ZNF549Q6P9A3 ME3-201ENST00000323418 1068 ntTSL 5 BASIC20.25■□□□□ 0.83
ZNF549Q6P9A3 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
ZNF549Q6P9A3 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
ZNF549Q6P9A3 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
ZNF549Q6P9A3 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
ZNF549Q6P9A3 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
ZNF549Q6P9A3 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC20.25■□□□□ 0.83
ZNF549Q6P9A3 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.25■□□□□ 0.83
ZNF549Q6P9A3 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
ZNF549Q6P9A3 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF549Q6P9A3 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF549Q6P9A3 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF549Q6P9A3 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.24■□□□□ 0.83
ZNF549Q6P9A3 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.24■□□□□ 0.83
ZNF549Q6P9A3 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF549Q6P9A3 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
ZNF549Q6P9A3 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF549Q6P9A3 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF549Q6P9A3 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF549Q6P9A3 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF549Q6P9A3 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF549Q6P9A3 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.24■□□□□ 0.83
ZNF549Q6P9A3 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
ZNF549Q6P9A3 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
ZNF549Q6P9A3 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC20.24■□□□□ 0.83
ZNF549Q6P9A3 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF549Q6P9A3 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.24■□□□□ 0.83
ZNF549Q6P9A3 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF549Q6P9A3 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF549Q6P9A3 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
ZNF549Q6P9A3 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF549Q6P9A3 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
ZNF549Q6P9A3 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
ZNF549Q6P9A3 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
ZNF549Q6P9A3 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC20.23■□□□□ 0.83
ZNF549Q6P9A3 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF549Q6P9A3 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF549Q6P9A3 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF549Q6P9A3 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF549Q6P9A3 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.23■□□□□ 0.83
ZNF549Q6P9A3 AC006015.1-201ENST00000429970 570 ntBASIC20.23■□□□□ 0.83
ZNF549Q6P9A3 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
ZNF549Q6P9A3 KRT18P11-201ENST00000435214 1283 ntBASIC20.23■□□□□ 0.83
ZNF549Q6P9A3 VMO1-204ENST00000441199 741 ntTSL 2 BASIC20.23■□□□□ 0.83
ZNF549Q6P9A3 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
ZNF549Q6P9A3 PLLP-204ENST00000569059 665 ntTSL 3 BASIC20.23■□□□□ 0.83
ZNF549Q6P9A3 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF549Q6P9A3 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms