Protein–RNA interactions for Protein: Q5VTB9

RNF220, E3 ubiquitin-protein ligase RNF220, humanhuman

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF220Q5VTB9 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
RNF220Q5VTB9 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
RNF220Q5VTB9 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
RNF220Q5VTB9 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC19.58■□□□□ 0.72
RNF220Q5VTB9 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC19.58■□□□□ 0.72
RNF220Q5VTB9 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC19.58■□□□□ 0.72
RNF220Q5VTB9 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC19.58■□□□□ 0.72
RNF220Q5VTB9 AC110285.6-201ENST00000617652 491 ntBASIC19.58■□□□□ 0.72
RNF220Q5VTB9 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
RNF220Q5VTB9 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
RNF220Q5VTB9 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
RNF220Q5VTB9 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
RNF220Q5VTB9 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
RNF220Q5VTB9 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
RNF220Q5VTB9 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
RNF220Q5VTB9 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC19.58■□□□□ 0.72
RNF220Q5VTB9 AL049796.1-201ENST00000565336 1766 ntBASIC19.57■□□□□ 0.72
RNF220Q5VTB9 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.57■□□□□ 0.72
RNF220Q5VTB9 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RNF220Q5VTB9 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RNF220Q5VTB9 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.57■□□□□ 0.72
RNF220Q5VTB9 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
RNF220Q5VTB9 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC19.57■□□□□ 0.72
RNF220Q5VTB9 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
RNF220Q5VTB9 AL355001.2-201ENST00000620617 1191 ntBASIC19.57■□□□□ 0.72
RNF220Q5VTB9 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
RNF220Q5VTB9 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
RNF220Q5VTB9 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
RNF220Q5VTB9 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
RNF220Q5VTB9 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.57■□□□□ 0.72
RNF220Q5VTB9 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RNF220Q5VTB9 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC19.56■□□□□ 0.72
RNF220Q5VTB9 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.56■□□□□ 0.72
RNF220Q5VTB9 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RNF220Q5VTB9 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RNF220Q5VTB9 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RNF220Q5VTB9 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC19.56■□□□□ 0.72
RNF220Q5VTB9 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RNF220Q5VTB9 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
RNF220Q5VTB9 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
RNF220Q5VTB9 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC19.56■□□□□ 0.72
RNF220Q5VTB9 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RNF220Q5VTB9 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC19.56■□□□□ 0.72
RNF220Q5VTB9 LHPP-203ENST00000392757 840 ntTSL 3 BASIC19.56■□□□□ 0.72
RNF220Q5VTB9 GRAMD4P2-201ENST00000423297 1097 ntBASIC19.56■□□□□ 0.72
RNF220Q5VTB9 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
RNF220Q5VTB9 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
RNF220Q5VTB9 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
RNF220Q5VTB9 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RNF220Q5VTB9 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC19.56■□□□□ 0.72
RNF220Q5VTB9 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
RNF220Q5VTB9 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RNF220Q5VTB9 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RNF220Q5VTB9 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RNF220Q5VTB9 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RNF220Q5VTB9 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
RNF220Q5VTB9 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RNF220Q5VTB9 AC007613.1-201ENST00000572811 2597 ntBASIC19.55■□□□□ 0.72
RNF220Q5VTB9 TSPY26P-201ENST00000476365 1326 ntBASIC19.55■□□□□ 0.72
RNF220Q5VTB9 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RNF220Q5VTB9 ASL-203ENST00000380839 1765 ntTSL 5 BASIC19.55■□□□□ 0.72
RNF220Q5VTB9 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.55■□□□□ 0.72
RNF220Q5VTB9 MIR939-201ENST00000401314 82 ntBASIC19.55■□□□□ 0.72
RNF220Q5VTB9 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC19.55■□□□□ 0.72
RNF220Q5VTB9 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC19.55■□□□□ 0.72
RNF220Q5VTB9 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
RNF220Q5VTB9 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RNF220Q5VTB9 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC19.55■□□□□ 0.72
RNF220Q5VTB9 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC19.55■□□□□ 0.72
RNF220Q5VTB9 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
RNF220Q5VTB9 RASA4CP-201ENST00000424092 1398 ntBASIC19.55■□□□□ 0.72
RNF220Q5VTB9 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
RNF220Q5VTB9 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.55■□□□□ 0.72
RNF220Q5VTB9 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC19.55■□□□□ 0.72
RNF220Q5VTB9 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
RNF220Q5VTB9 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RNF220Q5VTB9 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.54■□□□□ 0.72
RNF220Q5VTB9 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.54■□□□□ 0.72
RNF220Q5VTB9 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.54■□□□□ 0.72
RNF220Q5VTB9 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
RNF220Q5VTB9 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC19.54■□□□□ 0.72
RNF220Q5VTB9 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
RNF220Q5VTB9 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
RNF220Q5VTB9 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
RNF220Q5VTB9 AC009237.3-201ENST00000393279 1427 ntBASIC19.54■□□□□ 0.72
RNF220Q5VTB9 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.54■□□□□ 0.72
RNF220Q5VTB9 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RNF220Q5VTB9 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC19.54■□□□□ 0.72
RNF220Q5VTB9 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC19.54■□□□□ 0.72
RNF220Q5VTB9 AC091305.1-201ENST00000479476 895 ntBASIC19.54■□□□□ 0.72
RNF220Q5VTB9 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC19.54■□□□□ 0.72
RNF220Q5VTB9 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC19.54■□□□□ 0.72
RNF220Q5VTB9 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.54■□□□□ 0.72
RNF220Q5VTB9 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RNF220Q5VTB9 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
RNF220Q5VTB9 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RNF220Q5VTB9 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RNF220Q5VTB9 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
RNF220Q5VTB9 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
RNF220Q5VTB9 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 86.6 ms