Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.19■□□□□ 0.5
CCDC58Q4VC31 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC58Q4VC31 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC58Q4VC31 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.18■□□□□ 0.5
CCDC58Q4VC31 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC58Q4VC31 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.18■□□□□ 0.5
CCDC58Q4VC31 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
CCDC58Q4VC31 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC58Q4VC31 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC58Q4VC31 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CCDC58Q4VC31 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC58Q4VC31 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC18.18■□□□□ 0.5
CCDC58Q4VC31 AC233992.3-201ENST00000607491 485 ntBASIC18.18■□□□□ 0.5
CCDC58Q4VC31 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC58Q4VC31 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC18.18■□□□□ 0.5
CCDC58Q4VC31 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC58Q4VC31 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC58Q4VC31 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC58Q4VC31 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC58Q4VC31 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC58Q4VC31 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC58Q4VC31 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC58Q4VC31 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.18■□□□□ 0.5
CCDC58Q4VC31 AC099778.1-201ENST00000568593 1911 ntBASIC18.17■□□□□ 0.5
CCDC58Q4VC31 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC58Q4VC31 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.17■□□□□ 0.5
CCDC58Q4VC31 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC58Q4VC31 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC58Q4VC31 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC58Q4VC31 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC58Q4VC31 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CCDC58Q4VC31 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC58Q4VC31 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
CCDC58Q4VC31 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC58Q4VC31 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
CCDC58Q4VC31 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC58Q4VC31 IGHV3-19-201ENST00000521488 291 ntBASIC18.17■□□□□ 0.5
CCDC58Q4VC31 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC58Q4VC31 AICDA-202ENST00000537228 667 ntTSL 5 BASIC18.17■□□□□ 0.5
CCDC58Q4VC31 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC58Q4VC31 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC18.17■□□□□ 0.5
CCDC58Q4VC31 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC58Q4VC31 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
CCDC58Q4VC31 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC58Q4VC31 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC58Q4VC31 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
CCDC58Q4VC31 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC58Q4VC31 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC58Q4VC31 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC18.16■□□□□ 0.5
CCDC58Q4VC31 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC58Q4VC31 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC58Q4VC31 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC58Q4VC31 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.16■□□□□ 0.5
CCDC58Q4VC31 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
CCDC58Q4VC31 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
CCDC58Q4VC31 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC58Q4VC31 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.16■□□□□ 0.5
CCDC58Q4VC31 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
CCDC58Q4VC31 AC018445.3-201ENST00000624177 1945 ntBASIC18.16■□□□□ 0.5
CCDC58Q4VC31 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC18.16■□□□□ 0.5
CCDC58Q4VC31 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC18.16■□□□□ 0.5
CCDC58Q4VC31 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.16■□□□□ 0.5
CCDC58Q4VC31 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC18.16■□□□□ 0.5
CCDC58Q4VC31 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
CCDC58Q4VC31 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC58Q4VC31 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.16■□□□□ 0.5
CCDC58Q4VC31 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC58Q4VC31 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC58Q4VC31 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC18.16■□□□□ 0.5
CCDC58Q4VC31 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC58Q4VC31 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC58Q4VC31 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC58Q4VC31 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC58Q4VC31 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC58Q4VC31 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
CCDC58Q4VC31 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC58Q4VC31 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC58Q4VC31 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC58Q4VC31 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC58Q4VC31 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC58Q4VC31 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC58Q4VC31 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC58Q4VC31 TRIR-202ENST00000588213 841 ntTSL 3 BASIC18.15■□□□□ 0.5
CCDC58Q4VC31 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC58Q4VC31 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC58Q4VC31 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC18.15■□□□□ 0.5
CCDC58Q4VC31 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC58Q4VC31 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC18.15■□□□□ 0.5
CCDC58Q4VC31 PCDHAC2-203ENST00000615316 3011 ntBASIC18.15■□□□□ 0.5
CCDC58Q4VC31 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
CCDC58Q4VC31 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.5
CCDC58Q4VC31 AP004607.4-201ENST00000530158 1459 ntBASIC18.14■□□□□ 0.5
CCDC58Q4VC31 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
CCDC58Q4VC31 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC58Q4VC31 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.14■□□□□ 0.49
CCDC58Q4VC31 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.14■□□□□ 0.49
CCDC58Q4VC31 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
CCDC58Q4VC31 AL356441.2-201ENST00000443009 864 ntBASIC18.14■□□□□ 0.49
CCDC58Q4VC31 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC18.14■□□□□ 0.49
CCDC58Q4VC31 AC126544.1-201ENST00000580842 1059 ntBASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms