Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PKNOX1P55347 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
PKNOX1P55347 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PKNOX1P55347 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.97■□□□□ 0.79
PKNOX1P55347 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.97■□□□□ 0.79
PKNOX1P55347 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
PKNOX1P55347 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
PKNOX1P55347 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.97■□□□□ 0.79
PKNOX1P55347 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.97■□□□□ 0.79
PKNOX1P55347 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PKNOX1P55347 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PKNOX1P55347 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PKNOX1P55347 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
PKNOX1P55347 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.96■□□□□ 0.79
PKNOX1P55347 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PKNOX1P55347 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.96■□□□□ 0.79
PKNOX1P55347 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
PKNOX1P55347 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
PKNOX1P55347 DUX4L2-201ENST00000561772 1275 ntBASIC19.96■□□□□ 0.79
PKNOX1P55347 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.96■□□□□ 0.79
PKNOX1P55347 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.96■□□□□ 0.79
PKNOX1P55347 DUX4L6-201ENST00000626483 1275 ntBASIC19.96■□□□□ 0.79
PKNOX1P55347 DUX4L1-201ENST00000627662 1275 ntBASIC19.96■□□□□ 0.79
PKNOX1P55347 DUX4L8-201ENST00000629013 1275 ntBASIC19.96■□□□□ 0.79
PKNOX1P55347 DUX4L3-201ENST00000630187 1275 ntBASIC19.96■□□□□ 0.79
PKNOX1P55347 DUX4L7-201ENST00000630678 1275 ntBASIC19.96■□□□□ 0.79
PKNOX1P55347 DUX4L5-201ENST00000630834 1275 ntBASIC19.96■□□□□ 0.79
PKNOX1P55347 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PKNOX1P55347 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.96■□□□□ 0.79
PKNOX1P55347 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.96■□□□□ 0.79
PKNOX1P55347 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
PKNOX1P55347 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PKNOX1P55347 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.96■□□□□ 0.79
PKNOX1P55347 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PKNOX1P55347 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PKNOX1P55347 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.95■□□□□ 0.78
PKNOX1P55347 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
PKNOX1P55347 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
PKNOX1P55347 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PKNOX1P55347 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
PKNOX1P55347 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PKNOX1P55347 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PKNOX1P55347 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
PKNOX1P55347 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PKNOX1P55347 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PKNOX1P55347 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
PKNOX1P55347 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PKNOX1P55347 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.95■□□□□ 0.78
PKNOX1P55347 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.95■□□□□ 0.78
PKNOX1P55347 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC19.95■□□□□ 0.78
PKNOX1P55347 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PKNOX1P55347 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC19.95■□□□□ 0.78
PKNOX1P55347 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
PKNOX1P55347 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
PKNOX1P55347 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.95■□□□□ 0.78
PKNOX1P55347 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PKNOX1P55347 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.94■□□□□ 0.78
PKNOX1P55347 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
PKNOX1P55347 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
PKNOX1P55347 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
PKNOX1P55347 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
PKNOX1P55347 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PKNOX1P55347 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PKNOX1P55347 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.94■□□□□ 0.78
PKNOX1P55347 AL162377.1-201ENST00000618844 1793 ntBASIC19.94■□□□□ 0.78
PKNOX1P55347 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PKNOX1P55347 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
PKNOX1P55347 AC123595.1-201ENST00000440769 1046 ntBASIC19.94■□□□□ 0.78
PKNOX1P55347 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PKNOX1P55347 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.94■□□□□ 0.78
PKNOX1P55347 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.94■□□□□ 0.78
PKNOX1P55347 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PKNOX1P55347 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.93■□□□□ 0.78
PKNOX1P55347 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PKNOX1P55347 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.93■□□□□ 0.78
PKNOX1P55347 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PKNOX1P55347 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PKNOX1P55347 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.93■□□□□ 0.78
PKNOX1P55347 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PKNOX1P55347 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.93■□□□□ 0.78
PKNOX1P55347 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PKNOX1P55347 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.93■□□□□ 0.78
PKNOX1P55347 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.93■□□□□ 0.78
PKNOX1P55347 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC19.93■□□□□ 0.78
PKNOX1P55347 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.93■□□□□ 0.78
PKNOX1P55347 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
PKNOX1P55347 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.93■□□□□ 0.78
PKNOX1P55347 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.93■□□□□ 0.78
PKNOX1P55347 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PKNOX1P55347 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
PKNOX1P55347 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PKNOX1P55347 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PKNOX1P55347 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.93■□□□□ 0.78
PKNOX1P55347 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.93■□□□□ 0.78
PKNOX1P55347 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.93■□□□□ 0.78
PKNOX1P55347 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PKNOX1P55347 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.92■□□□□ 0.78
PKNOX1P55347 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
PKNOX1P55347 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PKNOX1P55347 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms