Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CDH12P55289 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.98■□□□□ 0.63
CDH12P55289 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CDH12P55289 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.98■□□□□ 0.63
CDH12P55289 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CDH12P55289 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CDH12P55289 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC18.98■□□□□ 0.63
CDH12P55289 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC18.98■□□□□ 0.63
CDH12P55289 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC18.97■□□□□ 0.63
CDH12P55289 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
CDH12P55289 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CDH12P55289 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.97■□□□□ 0.63
CDH12P55289 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC18.97■□□□□ 0.63
CDH12P55289 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CDH12P55289 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
CDH12P55289 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CDH12P55289 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC18.97■□□□□ 0.63
CDH12P55289 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
CDH12P55289 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CDH12P55289 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
CDH12P55289 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CDH12P55289 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CDH12P55289 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CDH12P55289 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CDH12P55289 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
CDH12P55289 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CDH12P55289 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC18.96■□□□□ 0.63
CDH12P55289 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CDH12P55289 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CDH12P55289 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CDH12P55289 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CDH12P55289 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
CDH12P55289 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC18.96■□□□□ 0.63
CDH12P55289 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CDH12P55289 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CDH12P55289 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC18.96■□□□□ 0.63
CDH12P55289 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CDH12P55289 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CDH12P55289 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CDH12P55289 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
CDH12P55289 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CDH12P55289 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CDH12P55289 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDH12P55289 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC18.95■□□□□ 0.62
CDH12P55289 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
CDH12P55289 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC18.95■□□□□ 0.62
CDH12P55289 STAC-204ENST00000457375 1366 ntTSL 2 BASIC18.95■□□□□ 0.62
CDH12P55289 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
CDH12P55289 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDH12P55289 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC18.95■□□□□ 0.62
CDH12P55289 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDH12P55289 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC18.95■□□□□ 0.62
CDH12P55289 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.95■□□□□ 0.62
CDH12P55289 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC18.95■□□□□ 0.62
CDH12P55289 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC18.95■□□□□ 0.62
CDH12P55289 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CDH12P55289 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
CDH12P55289 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDH12P55289 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CDH12P55289 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CDH12P55289 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDH12P55289 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDH12P55289 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC18.95■□□□□ 0.62
CDH12P55289 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC18.95■□□□□ 0.62
CDH12P55289 AC008175.2-201ENST00000612840 297 ntBASIC18.95■□□□□ 0.62
CDH12P55289 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CDH12P55289 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.95■□□□□ 0.62
CDH12P55289 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDH12P55289 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDH12P55289 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CDH12P55289 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CDH12P55289 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDH12P55289 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
CDH12P55289 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC18.95■□□□□ 0.62
CDH12P55289 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDH12P55289 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDH12P55289 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.95■□□□□ 0.62
CDH12P55289 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDH12P55289 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.94■□□□□ 0.62
CDH12P55289 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDH12P55289 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC18.94■□□□□ 0.62
CDH12P55289 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDH12P55289 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDH12P55289 POU5F1P4-201ENST00000413175 1085 ntBASIC18.94■□□□□ 0.62
CDH12P55289 SERP1-208ENST00000491660 830 ntTSL 2 BASIC18.94■□□□□ 0.62
CDH12P55289 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
CDH12P55289 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.94■□□□□ 0.62
CDH12P55289 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDH12P55289 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDH12P55289 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CDH12P55289 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.94■□□□□ 0.62
CDH12P55289 LINC02228-203ENST00000641970 1355 ntBASIC18.93■□□□□ 0.62
CDH12P55289 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC18.93■□□□□ 0.62
CDH12P55289 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDH12P55289 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.93■□□□□ 0.62
CDH12P55289 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDH12P55289 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDH12P55289 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDH12P55289 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CDH12P55289 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 110.3 ms