Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CX3CR1P49238 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
CX3CR1P49238 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CX3CR1P49238 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CX3CR1P49238 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC17.9■□□□□ 0.46
CX3CR1P49238 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC17.9■□□□□ 0.46
CX3CR1P49238 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC17.9■□□□□ 0.46
CX3CR1P49238 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC17.9■□□□□ 0.46
CX3CR1P49238 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC17.9■□□□□ 0.46
CX3CR1P49238 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CX3CR1P49238 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CX3CR1P49238 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CX3CR1P49238 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CX3CR1P49238 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
CX3CR1P49238 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
CX3CR1P49238 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
CX3CR1P49238 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CX3CR1P49238 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CX3CR1P49238 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CX3CR1P49238 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CX3CR1P49238 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CX3CR1P49238 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC17.89■□□□□ 0.45
CX3CR1P49238 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CX3CR1P49238 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC17.89■□□□□ 0.45
CX3CR1P49238 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CX3CR1P49238 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CX3CR1P49238 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC17.89■□□□□ 0.45
CX3CR1P49238 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC17.89■□□□□ 0.45
CX3CR1P49238 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
CX3CR1P49238 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC17.89■□□□□ 0.45
CX3CR1P49238 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC17.89■□□□□ 0.45
CX3CR1P49238 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
CX3CR1P49238 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CX3CR1P49238 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CX3CR1P49238 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CX3CR1P49238 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
CX3CR1P49238 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CX3CR1P49238 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CX3CR1P49238 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CX3CR1P49238 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CX3CR1P49238 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CX3CR1P49238 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CX3CR1P49238 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CX3CR1P49238 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC17.88■□□□□ 0.45
CX3CR1P49238 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC17.88■□□□□ 0.45
CX3CR1P49238 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC17.88■□□□□ 0.45
CX3CR1P49238 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC17.88■□□□□ 0.45
CX3CR1P49238 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
CX3CR1P49238 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC17.88■□□□□ 0.45
CX3CR1P49238 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC17.88■□□□□ 0.45
CX3CR1P49238 SLC7A5P1-201ENST00000568957 537 ntBASIC17.88■□□□□ 0.45
CX3CR1P49238 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CX3CR1P49238 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC17.88■□□□□ 0.45
CX3CR1P49238 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC17.88■□□□□ 0.45
CX3CR1P49238 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CX3CR1P49238 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CX3CR1P49238 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC17.88■□□□□ 0.45
CX3CR1P49238 DET1-207ENST00000564406 2315 ntTSL 2 BASIC17.88■□□□□ 0.45
CX3CR1P49238 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC17.88■□□□□ 0.45
CX3CR1P49238 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC17.88■□□□□ 0.45
CX3CR1P49238 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC17.88■□□□□ 0.45
CX3CR1P49238 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
CX3CR1P49238 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CX3CR1P49238 RBM17P2-201ENST00000616397 1405 ntBASIC17.88■□□□□ 0.45
CX3CR1P49238 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CX3CR1P49238 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CX3CR1P49238 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CX3CR1P49238 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CX3CR1P49238 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC17.88■□□□□ 0.45
CX3CR1P49238 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC17.88■□□□□ 0.45
CX3CR1P49238 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CX3CR1P49238 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CX3CR1P49238 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CX3CR1P49238 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC17.87■□□□□ 0.45
CX3CR1P49238 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CX3CR1P49238 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CX3CR1P49238 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CX3CR1P49238 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CX3CR1P49238 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
CX3CR1P49238 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CX3CR1P49238 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC17.87■□□□□ 0.45
CX3CR1P49238 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CX3CR1P49238 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC17.87■□□□□ 0.45
CX3CR1P49238 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC17.87■□□□□ 0.45
CX3CR1P49238 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
CX3CR1P49238 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CX3CR1P49238 KRT18P61-201ENST00000585825 1298 ntBASIC17.87■□□□□ 0.45
CX3CR1P49238 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CX3CR1P49238 AC243732.1-201ENST00000612648 864 ntBASIC17.87■□□□□ 0.45
CX3CR1P49238 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
CX3CR1P49238 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC17.87■□□□□ 0.45
CX3CR1P49238 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CX3CR1P49238 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CX3CR1P49238 AC019069.1-201ENST00000610008 1333 ntBASIC17.87■□□□□ 0.45
CX3CR1P49238 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CX3CR1P49238 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC17.87■□□□□ 0.45
CX3CR1P49238 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC17.87■□□□□ 0.45
CX3CR1P49238 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC17.87■□□□□ 0.45
CX3CR1P49238 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC17.87■□□□□ 0.45
CX3CR1P49238 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms