Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
SOX2P48431 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
SOX2P48431 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC17.93■□□□□ 0.46
SOX2P48431 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC17.93■□□□□ 0.46
SOX2P48431 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SOX2P48431 AC092720.2-201ENST00000602388 1665 ntBASIC17.93■□□□□ 0.46
SOX2P48431 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC17.93■□□□□ 0.46
SOX2P48431 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SOX2P48431 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC17.93■□□□□ 0.46
SOX2P48431 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SOX2P48431 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SOX2P48431 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC17.92■□□□□ 0.46
SOX2P48431 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC17.92■□□□□ 0.46
SOX2P48431 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC17.92■□□□□ 0.46
SOX2P48431 AC027682.1-201ENST00000562846 899 ntBASIC17.92■□□□□ 0.46
SOX2P48431 EEF1DP3-203ENST00000566025 782 ntBASIC17.92■□□□□ 0.46
SOX2P48431 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC17.92■□□□□ 0.46
SOX2P48431 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SOX2P48431 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC17.92■□□□□ 0.46
SOX2P48431 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
SOX2P48431 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
SOX2P48431 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC17.92■□□□□ 0.46
SOX2P48431 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SOX2P48431 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC17.91■□□□□ 0.46
SOX2P48431 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC17.91■□□□□ 0.46
SOX2P48431 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SOX2P48431 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC17.91■□□□□ 0.46
SOX2P48431 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
SOX2P48431 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC17.91■□□□□ 0.46
SOX2P48431 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SOX2P48431 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SOX2P48431 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SOX2P48431 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
SOX2P48431 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SOX2P48431 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC17.91■□□□□ 0.46
SOX2P48431 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC17.91■□□□□ 0.46
SOX2P48431 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC17.91■□□□□ 0.46
SOX2P48431 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC17.91■□□□□ 0.46
SOX2P48431 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC17.91■□□□□ 0.46
SOX2P48431 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC17.91■□□□□ 0.46
SOX2P48431 GRAMD4P4-201ENST00000613563 1115 ntBASIC17.91■□□□□ 0.46
SOX2P48431 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SOX2P48431 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SOX2P48431 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
SOX2P48431 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SOX2P48431 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SOX2P48431 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SOX2P48431 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SOX2P48431 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SOX2P48431 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC17.91■□□□□ 0.46
SOX2P48431 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC17.91■□□□□ 0.46
SOX2P48431 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SOX2P48431 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC17.91■□□□□ 0.46
SOX2P48431 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SOX2P48431 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SOX2P48431 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SOX2P48431 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SOX2P48431 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
SOX2P48431 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
SOX2P48431 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SOX2P48431 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SOX2P48431 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC17.9■□□□□ 0.46
SOX2P48431 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SOX2P48431 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SOX2P48431 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC17.9■□□□□ 0.46
SOX2P48431 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SOX2P48431 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SOX2P48431 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.9■□□□□ 0.46
SOX2P48431 MAG-206ENST00000597035 542 ntTSL 4 BASIC17.9■□□□□ 0.46
SOX2P48431 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SOX2P48431 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SOX2P48431 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SOX2P48431 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC17.9■□□□□ 0.46
SOX2P48431 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SOX2P48431 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
SOX2P48431 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SOX2P48431 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SOX2P48431 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SOX2P48431 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
SOX2P48431 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.46
SOX2P48431 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
SOX2P48431 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SOX2P48431 MFF-207ENST00000409565 1548 ntTSL 2 BASIC17.89■□□□□ 0.45
SOX2P48431 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SOX2P48431 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
SOX2P48431 AC087289.5-201ENST00000586076 3175 ntBASIC17.89■□□□□ 0.45
SOX2P48431 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SOX2P48431 PBX2P1-201ENST00000493219 1291 ntBASIC17.89■□□□□ 0.45
SOX2P48431 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC17.89■□□□□ 0.45
SOX2P48431 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
SOX2P48431 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
SOX2P48431 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC17.89■□□□□ 0.45
SOX2P48431 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC17.89■□□□□ 0.45
SOX2P48431 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC17.89■□□□□ 0.45
SOX2P48431 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
SOX2P48431 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SOX2P48431 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC17.88■□□□□ 0.45
SOX2P48431 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SOX2P48431 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
SOX2P48431 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms