Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CDX1P47902 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDX1P47902 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CDX1P47902 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CDX1P47902 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDX1P47902 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDX1P47902 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC16.55■□□□□ 0.24
CDX1P47902 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC16.55■□□□□ 0.24
CDX1P47902 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDX1P47902 AC104187.1-201ENST00000607510 612 ntBASIC16.55■□□□□ 0.24
CDX1P47902 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC16.55■□□□□ 0.24
CDX1P47902 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC16.55■□□□□ 0.24
CDX1P47902 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDX1P47902 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC16.55■□□□□ 0.24
CDX1P47902 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CDX1P47902 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDX1P47902 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDX1P47902 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
CDX1P47902 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC16.55■□□□□ 0.24
CDX1P47902 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC16.55■□□□□ 0.24
CDX1P47902 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
CDX1P47902 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDX1P47902 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDX1P47902 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC16.54■□□□□ 0.24
CDX1P47902 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CDX1P47902 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CDX1P47902 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDX1P47902 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC16.54■□□□□ 0.24
CDX1P47902 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC16.54■□□□□ 0.24
CDX1P47902 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDX1P47902 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDX1P47902 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC16.54■□□□□ 0.24
CDX1P47902 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDX1P47902 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
CDX1P47902 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDX1P47902 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC16.54■□□□□ 0.24
CDX1P47902 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC16.54■□□□□ 0.24
CDX1P47902 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CDX1P47902 RARRES2P11-201ENST00000635158 484 ntBASIC16.54■□□□□ 0.24
CDX1P47902 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CDX1P47902 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDX1P47902 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
CDX1P47902 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CDX1P47902 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CDX1P47902 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CDX1P47902 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC16.53■□□□□ 0.24
CDX1P47902 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC16.53■□□□□ 0.24
CDX1P47902 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDX1P47902 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC16.53■□□□□ 0.24
CDX1P47902 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC16.53■□□□□ 0.24
CDX1P47902 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDX1P47902 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDX1P47902 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CDX1P47902 SMG8-203ENST00000578922 2178 ntBASIC16.53■□□□□ 0.24
CDX1P47902 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDX1P47902 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDX1P47902 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDX1P47902 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CDX1P47902 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDX1P47902 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC16.53■□□□□ 0.24
CDX1P47902 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
CDX1P47902 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CDX1P47902 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC16.53■□□□□ 0.24
CDX1P47902 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDX1P47902 DLX3-202ENST00000512495 834 ntTSL 2 BASIC16.53■□□□□ 0.24
CDX1P47902 VPS53-216ENST00000574029 585 ntTSL 4 BASIC16.53■□□□□ 0.24
CDX1P47902 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDX1P47902 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC16.53■□□□□ 0.24
CDX1P47902 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDX1P47902 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC16.53■□□□□ 0.24
CDX1P47902 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CDX1P47902 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.24
CDX1P47902 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CDX1P47902 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
CDX1P47902 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
CDX1P47902 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CDX1P47902 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC16.52■□□□□ 0.24
CDX1P47902 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CDX1P47902 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CDX1P47902 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CDX1P47902 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CDX1P47902 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CDX1P47902 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CDX1P47902 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
CDX1P47902 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC16.52■□□□□ 0.24
CDX1P47902 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC16.52■□□□□ 0.24
CDX1P47902 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC16.52■□□□□ 0.24
CDX1P47902 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC16.52■□□□□ 0.24
CDX1P47902 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CDX1P47902 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
CDX1P47902 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
CDX1P47902 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
CDX1P47902 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.23
CDX1P47902 AC098818.2-201ENST00000564925 2320 ntBASIC16.52■□□□□ 0.23
CDX1P47902 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CDX1P47902 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
CDX1P47902 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC16.52■□□□□ 0.23
CDX1P47902 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CDX1P47902 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CDX1P47902 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms