Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC17.88■□□□□ 0.45
COL8A1P27658 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL8A1P27658 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
COL8A1P27658 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL8A1P27658 NMU-205ENST00000511469 756 ntTSL 3 BASIC17.88■□□□□ 0.45
COL8A1P27658 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL8A1P27658 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC17.88■□□□□ 0.45
COL8A1P27658 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
COL8A1P27658 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC17.88■□□□□ 0.45
COL8A1P27658 DECR2-212ENST00000627716 352 ntTSL 2 BASIC17.88■□□□□ 0.45
COL8A1P27658 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC17.88■□□□□ 0.45
COL8A1P27658 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
COL8A1P27658 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL8A1P27658 HTR7P1-201ENST00000538670 1336 ntBASIC17.88■□□□□ 0.45
COL8A1P27658 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
COL8A1P27658 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL8A1P27658 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
COL8A1P27658 ANOS2P-203ENST00000472227 1816 ntBASIC17.88■□□□□ 0.45
COL8A1P27658 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL8A1P27658 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL8A1P27658 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL8A1P27658 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL8A1P27658 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL8A1P27658 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL8A1P27658 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
COL8A1P27658 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL8A1P27658 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC17.87■□□□□ 0.45
COL8A1P27658 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL8A1P27658 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL8A1P27658 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL8A1P27658 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL8A1P27658 UPK3BP1-201ENST00000428678 509 ntBASIC17.87■□□□□ 0.45
COL8A1P27658 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC17.87■□□□□ 0.45
COL8A1P27658 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC17.87■□□□□ 0.45
COL8A1P27658 METTL23-204ENST00000586752 904 ntTSL 2 BASIC17.87■□□□□ 0.45
COL8A1P27658 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL8A1P27658 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL8A1P27658 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL8A1P27658 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
COL8A1P27658 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL8A1P27658 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL8A1P27658 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC17.87■□□□□ 0.45
COL8A1P27658 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
COL8A1P27658 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL8A1P27658 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL8A1P27658 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL8A1P27658 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC17.87■□□□□ 0.45
COL8A1P27658 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC17.86■□□□□ 0.45
COL8A1P27658 AC003102.1-202ENST00000563394 1796 ntBASIC17.86■□□□□ 0.45
COL8A1P27658 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC17.86■□□□□ 0.45
COL8A1P27658 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
COL8A1P27658 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL8A1P27658 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL8A1P27658 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL8A1P27658 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
COL8A1P27658 AL390955.1-201ENST00000428694 934 ntBASIC17.86■□□□□ 0.45
COL8A1P27658 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC17.86■□□□□ 0.45
COL8A1P27658 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC17.86■□□□□ 0.45
COL8A1P27658 SERP1-205ENST00000487153 657 ntTSL 4 BASIC17.86■□□□□ 0.45
COL8A1P27658 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL8A1P27658 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
COL8A1P27658 AC073508.3-201ENST00000619697 1419 ntBASIC17.86■□□□□ 0.45
COL8A1P27658 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC17.86■□□□□ 0.45
COL8A1P27658 CYP2D8P-201ENST00000433633 1490 ntBASIC17.86■□□□□ 0.45
COL8A1P27658 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
COL8A1P27658 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC17.86■□□□□ 0.45
COL8A1P27658 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC17.86■□□□□ 0.45
COL8A1P27658 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL8A1P27658 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL8A1P27658 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
COL8A1P27658 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL8A1P27658 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL8A1P27658 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL8A1P27658 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL8A1P27658 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL8A1P27658 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
COL8A1P27658 SAPCD2P1-201ENST00000395413 1184 ntBASIC17.85■□□□□ 0.45
COL8A1P27658 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC17.85■□□□□ 0.45
COL8A1P27658 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL8A1P27658 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC17.85■□□□□ 0.45
COL8A1P27658 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
COL8A1P27658 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC17.85■□□□□ 0.45
COL8A1P27658 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC17.85■□□□□ 0.45
COL8A1P27658 AC005829.2-201ENST00000571422 1056 ntBASIC17.85■□□□□ 0.45
COL8A1P27658 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC17.85■□□□□ 0.45
COL8A1P27658 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
COL8A1P27658 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC17.85■□□□□ 0.45
COL8A1P27658 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL8A1P27658 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL8A1P27658 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
COL8A1P27658 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL8A1P27658 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL8A1P27658 C11orf96-202ENST00000528572 1834 ntBASIC17.84■□□□□ 0.45
COL8A1P27658 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL8A1P27658 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL8A1P27658 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL8A1P27658 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL8A1P27658 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL8A1P27658 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL8A1P27658 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms