Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.14■□□□□ 0.49
LIMS3P0CW19 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIMS3P0CW19 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC18.14■□□□□ 0.49
LIMS3P0CW19 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LIMS3P0CW19 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIMS3P0CW19 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIMS3P0CW19 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIMS3P0CW19 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIMS3P0CW19 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC18.13■□□□□ 0.49
LIMS3P0CW19 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIMS3P0CW19 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIMS3P0CW19 MFF-208ENST00000409616 1247 ntTSL 5 BASIC18.13■□□□□ 0.49
LIMS3P0CW19 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LIMS3P0CW19 RARRES2P11-201ENST00000635158 484 ntBASIC18.13■□□□□ 0.49
LIMS3P0CW19 MIR2861-201ENST00000636310 90 ntBASIC18.13■□□□□ 0.49
LIMS3P0CW19 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC18.13■□□□□ 0.49
LIMS3P0CW19 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC18.13■□□□□ 0.49
LIMS3P0CW19 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIMS3P0CW19 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIMS3P0CW19 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC18.13■□□□□ 0.49
LIMS3P0CW19 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LIMS3P0CW19 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIMS3P0CW19 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
LIMS3P0CW19 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LIMS3P0CW19 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC18.12■□□□□ 0.49
LIMS3P0CW19 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIMS3P0CW19 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.12■□□□□ 0.49
LIMS3P0CW19 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIMS3P0CW19 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIMS3P0CW19 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
LIMS3P0CW19 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC18.12■□□□□ 0.49
LIMS3P0CW19 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC18.12■□□□□ 0.49
LIMS3P0CW19 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIMS3P0CW19 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIMS3P0CW19 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LIMS3P0CW19 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
LIMS3P0CW19 MFF-207ENST00000409565 1548 ntTSL 2 BASIC18.12■□□□□ 0.49
LIMS3P0CW19 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMS3P0CW19 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
LIMS3P0CW19 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMS3P0CW19 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC18.11■□□□□ 0.49
LIMS3P0CW19 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMS3P0CW19 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMS3P0CW19 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMS3P0CW19 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LIMS3P0CW19 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LIMS3P0CW19 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMS3P0CW19 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
LIMS3P0CW19 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC18.11■□□□□ 0.49
LIMS3P0CW19 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMS3P0CW19 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC18.11■□□□□ 0.49
LIMS3P0CW19 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMS3P0CW19 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC18.11■□□□□ 0.49
LIMS3P0CW19 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMS3P0CW19 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMS3P0CW19 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMS3P0CW19 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LIMS3P0CW19 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMS3P0CW19 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMS3P0CW19 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMS3P0CW19 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMS3P0CW19 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMS3P0CW19 AP000974.1-201ENST00000623909 2387 ntBASIC18.11■□□□□ 0.49
LIMS3P0CW19 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.11■□□□□ 0.49
LIMS3P0CW19 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMS3P0CW19 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.1■□□□□ 0.49
LIMS3P0CW19 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
LIMS3P0CW19 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.1■□□□□ 0.49
LIMS3P0CW19 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC18.1■□□□□ 0.49
LIMS3P0CW19 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC18.1■□□□□ 0.49
LIMS3P0CW19 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMS3P0CW19 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIMS3P0CW19 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC18.1■□□□□ 0.49
LIMS3P0CW19 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC18.1■□□□□ 0.49
LIMS3P0CW19 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIMS3P0CW19 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMS3P0CW19 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMS3P0CW19 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC18.1■□□□□ 0.49
LIMS3P0CW19 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMS3P0CW19 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIMS3P0CW19 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMS3P0CW19 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC18.1■□□□□ 0.49
LIMS3P0CW19 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIMS3P0CW19 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC18.1■□□□□ 0.49
LIMS3P0CW19 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMS3P0CW19 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMS3P0CW19 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMS3P0CW19 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
LIMS3P0CW19 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
LIMS3P0CW19 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIMS3P0CW19 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMS3P0CW19 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMS3P0CW19 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMS3P0CW19 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.09■□□□□ 0.49
LIMS3P0CW19 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LIMS3P0CW19 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMS3P0CW19 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC18.09■□□□□ 0.49
LIMS3P0CW19 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LIMS3P0CW19 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.09■□□□□ 0.49
LIMS3P0CW19 UNC93B3-201ENST00000308076 687 ntBASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms