Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
LDLRP01130 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.74
LDLRP01130 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.64■□□□□ 0.74
LDLRP01130 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.74
LDLRP01130 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.64■□□□□ 0.74
LDLRP01130 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
LDLRP01130 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.64■□□□□ 0.73
LDLRP01130 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LDLRP01130 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC19.64■□□□□ 0.73
LDLRP01130 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC19.64■□□□□ 0.73
LDLRP01130 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC19.64■□□□□ 0.73
LDLRP01130 PARP1-210ENST00000629232 477 ntTSL 5 BASIC19.64■□□□□ 0.73
LDLRP01130 AC068587.7-201ENST00000641602 218 ntBASIC19.64■□□□□ 0.73
LDLRP01130 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
LDLRP01130 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LDLRP01130 AC003102.1-202ENST00000563394 1796 ntBASIC19.64■□□□□ 0.73
LDLRP01130 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.64■□□□□ 0.73
LDLRP01130 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
LDLRP01130 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LDLRP01130 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LDLRP01130 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.73
LDLRP01130 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.64■□□□□ 0.73
LDLRP01130 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
LDLRP01130 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LDLRP01130 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.63■□□□□ 0.73
LDLRP01130 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.63■□□□□ 0.73
LDLRP01130 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.63■□□□□ 0.73
LDLRP01130 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LDLRP01130 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC19.63■□□□□ 0.73
LDLRP01130 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LDLRP01130 KRT18P6-201ENST00000555540 1265 ntBASIC19.63■□□□□ 0.73
LDLRP01130 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC19.63■□□□□ 0.73
LDLRP01130 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LDLRP01130 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
LDLRP01130 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
LDLRP01130 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
LDLRP01130 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LDLRP01130 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LDLRP01130 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LDLRP01130 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LDLRP01130 STX4-202ENST00000394998 1498 ntTSL 2 BASIC19.62■□□□□ 0.73
LDLRP01130 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.62■□□□□ 0.73
LDLRP01130 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.62■□□□□ 0.73
LDLRP01130 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC19.62■□□□□ 0.73
LDLRP01130 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
LDLRP01130 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LDLRP01130 AL034346.1-201ENST00000568244 1277 ntBASIC19.62■□□□□ 0.73
LDLRP01130 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.62■□□□□ 0.73
LDLRP01130 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LDLRP01130 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LDLRP01130 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
LDLRP01130 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LDLRP01130 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.62■□□□□ 0.73
LDLRP01130 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.62■□□□□ 0.73
LDLRP01130 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.61■□□□□ 0.73
LDLRP01130 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
LDLRP01130 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
LDLRP01130 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
LDLRP01130 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LDLRP01130 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LDLRP01130 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
LDLRP01130 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LDLRP01130 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.61■□□□□ 0.73
LDLRP01130 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LDLRP01130 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LDLRP01130 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LDLRP01130 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LDLRP01130 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LDLRP01130 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC19.61■□□□□ 0.73
LDLRP01130 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.61■□□□□ 0.73
LDLRP01130 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC19.61■□□□□ 0.73
LDLRP01130 SPI1-203ENST00000533030 661 ntTSL 2 BASIC19.61■□□□□ 0.73
LDLRP01130 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC19.61■□□□□ 0.73
LDLRP01130 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
LDLRP01130 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LDLRP01130 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC19.61■□□□□ 0.73
LDLRP01130 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
LDLRP01130 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
LDLRP01130 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LDLRP01130 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LDLRP01130 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LDLRP01130 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LDLRP01130 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC19.6■□□□□ 0.73
LDLRP01130 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LDLRP01130 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LDLRP01130 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
LDLRP01130 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LDLRP01130 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LDLRP01130 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LDLRP01130 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LDLRP01130 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.6■□□□□ 0.73
LDLRP01130 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC19.6■□□□□ 0.73
LDLRP01130 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LDLRP01130 AC087239.1-201ENST00000622671 572 ntBASIC19.6■□□□□ 0.73
LDLRP01130 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
LDLRP01130 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
LDLRP01130 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LDLRP01130 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LDLRP01130 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LDLRP01130 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms