Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLPTM1O96005 DUX4L4-201ENST00000566884 1269 ntBASIC19.19■□□□□ 0.66
CLPTM1O96005 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CLPTM1O96005 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CLPTM1O96005 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CLPTM1O96005 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLPTM1O96005 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
CLPTM1O96005 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.19■□□□□ 0.66
CLPTM1O96005 SYT6-210ENST00000641643 1587 ntBASIC19.19■□□□□ 0.66
CLPTM1O96005 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLPTM1O96005 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
CLPTM1O96005 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
CLPTM1O96005 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.18■□□□□ 0.66
CLPTM1O96005 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLPTM1O96005 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC19.18■□□□□ 0.66
CLPTM1O96005 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLPTM1O96005 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLPTM1O96005 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLPTM1O96005 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLPTM1O96005 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLPTM1O96005 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLPTM1O96005 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLPTM1O96005 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLPTM1O96005 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC19.18■□□□□ 0.66
CLPTM1O96005 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC19.18■□□□□ 0.66
CLPTM1O96005 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLPTM1O96005 AL139246.5-201ENST00000606645 996 ntBASIC19.18■□□□□ 0.66
CLPTM1O96005 AC092171.4-201ENST00000609130 632 ntBASIC19.18■□□□□ 0.66
CLPTM1O96005 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
CLPTM1O96005 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
CLPTM1O96005 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLPTM1O96005 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLPTM1O96005 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLPTM1O96005 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLPTM1O96005 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLPTM1O96005 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
CLPTM1O96005 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLPTM1O96005 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLPTM1O96005 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLPTM1O96005 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC19.17■□□□□ 0.66
CLPTM1O96005 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLPTM1O96005 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC19.17■□□□□ 0.66
CLPTM1O96005 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
CLPTM1O96005 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CLPTM1O96005 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLPTM1O96005 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.17■□□□□ 0.66
CLPTM1O96005 SERBP1P1-201ENST00000396021 1160 ntBASIC19.17■□□□□ 0.66
CLPTM1O96005 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CLPTM1O96005 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC19.17■□□□□ 0.66
CLPTM1O96005 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CLPTM1O96005 AL136162.1-201ENST00000607711 1078 ntBASIC19.17■□□□□ 0.66
CLPTM1O96005 RALB-208ENST00000631312 311 ntTSL 5 BASIC19.17■□□□□ 0.66
CLPTM1O96005 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CLPTM1O96005 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CLPTM1O96005 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
CLPTM1O96005 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLPTM1O96005 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLPTM1O96005 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLPTM1O96005 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLPTM1O96005 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLPTM1O96005 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLPTM1O96005 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC19.17■□□□□ 0.66
CLPTM1O96005 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLPTM1O96005 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CLPTM1O96005 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLPTM1O96005 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.16■□□□□ 0.66
CLPTM1O96005 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
CLPTM1O96005 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLPTM1O96005 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC19.16■□□□□ 0.66
CLPTM1O96005 PTCHD3P2-201ENST00000424937 1205 ntBASIC19.16■□□□□ 0.66
CLPTM1O96005 PBX2P1-201ENST00000493219 1291 ntBASIC19.16■□□□□ 0.66
CLPTM1O96005 DUX4L19-201ENST00000557448 1267 ntBASIC19.16■□□□□ 0.66
CLPTM1O96005 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLPTM1O96005 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
CLPTM1O96005 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLPTM1O96005 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLPTM1O96005 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CLPTM1O96005 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLPTM1O96005 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLPTM1O96005 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLPTM1O96005 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC19.15■□□□□ 0.66
CLPTM1O96005 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLPTM1O96005 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLPTM1O96005 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CLPTM1O96005 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLPTM1O96005 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CLPTM1O96005 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLPTM1O96005 AC024257.2-201ENST00000549699 147 ntBASIC19.15■□□□□ 0.66
CLPTM1O96005 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CLPTM1O96005 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC19.15■□□□□ 0.66
CLPTM1O96005 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLPTM1O96005 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLPTM1O96005 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLPTM1O96005 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
CLPTM1O96005 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLPTM1O96005 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLPTM1O96005 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLPTM1O96005 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLPTM1O96005 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC19.15■□□□□ 0.66
CLPTM1O96005 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms