Protein–RNA interactions for Protein: O94782

USP1, Ubiquitin carboxyl-terminal hydrolase 1, humanhuman

Predictions only

Length 785 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP1O94782 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP1O94782 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USP1O94782 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USP1O94782 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP1O94782 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP1O94782 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC20.62■□□□□ 0.89
USP1O94782 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.62■□□□□ 0.89
USP1O94782 AL512408.1-201ENST00000569378 2000 ntBASIC20.62■□□□□ 0.89
USP1O94782 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
USP1O94782 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USP1O94782 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.62■□□□□ 0.89
USP1O94782 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
USP1O94782 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC20.62■□□□□ 0.89
USP1O94782 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC20.62■□□□□ 0.89
USP1O94782 PLD4-205ENST00000553861 667 ntTSL 2 BASIC20.62■□□□□ 0.89
USP1O94782 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP1O94782 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
USP1O94782 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP1O94782 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
USP1O94782 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.61■□□□□ 0.89
USP1O94782 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
USP1O94782 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP1O94782 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
USP1O94782 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP1O94782 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC20.61■□□□□ 0.89
USP1O94782 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
USP1O94782 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
USP1O94782 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC20.61■□□□□ 0.89
USP1O94782 ANKRD20A6P-201ENST00000618763 204 ntBASIC20.61■□□□□ 0.89
USP1O94782 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC20.61■□□□□ 0.89
USP1O94782 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.61■□□□□ 0.89
USP1O94782 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
USP1O94782 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP1O94782 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP1O94782 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
USP1O94782 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP1O94782 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
USP1O94782 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP1O94782 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP1O94782 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP1O94782 AC092720.2-201ENST00000602388 1665 ntBASIC20.61■□□□□ 0.89
USP1O94782 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.6■□□□□ 0.89
USP1O94782 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
USP1O94782 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USP1O94782 AC092666.2-201ENST00000613287 246 ntBASIC20.6■□□□□ 0.89
USP1O94782 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.6■□□□□ 0.89
USP1O94782 FGF8-207ENST00000618991 856 ntTSL 3 BASIC20.6■□□□□ 0.89
USP1O94782 MIR2861-201ENST00000636310 90 ntBASIC20.6■□□□□ 0.89
USP1O94782 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
USP1O94782 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USP1O94782 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
USP1O94782 RBM17P2-201ENST00000616397 1405 ntBASIC20.6■□□□□ 0.89
USP1O94782 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
USP1O94782 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
USP1O94782 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
USP1O94782 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20.59■□□□□ 0.89
USP1O94782 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP1O94782 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP1O94782 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP1O94782 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP1O94782 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.59■□□□□ 0.89
USP1O94782 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
USP1O94782 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.59■□□□□ 0.89
USP1O94782 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC20.59■□□□□ 0.89
USP1O94782 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC20.59■□□□□ 0.89
USP1O94782 AC091799.1-201ENST00000422823 811 ntBASIC20.59■□□□□ 0.89
USP1O94782 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC20.59■□□□□ 0.89
USP1O94782 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC20.59■□□□□ 0.89
USP1O94782 AC087623.3-201ENST00000607047 1098 ntBASIC20.59■□□□□ 0.89
USP1O94782 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC20.59■□□□□ 0.89
USP1O94782 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.59■□□□□ 0.89
USP1O94782 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
USP1O94782 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP1O94782 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC20.59■□□□□ 0.89
USP1O94782 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
USP1O94782 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP1O94782 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC20.59■□□□□ 0.89
USP1O94782 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP1O94782 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
USP1O94782 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
USP1O94782 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.59■□□□□ 0.89
USP1O94782 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP1O94782 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.58■□□□□ 0.89
USP1O94782 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
USP1O94782 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
USP1O94782 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.58■□□□□ 0.89
USP1O94782 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
USP1O94782 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
USP1O94782 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.58■□□□□ 0.89
USP1O94782 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
USP1O94782 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.58■□□□□ 0.89
USP1O94782 PARL-206ENST00000435888 1098 ntTSL 5 BASIC20.58■□□□□ 0.89
USP1O94782 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
USP1O94782 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
USP1O94782 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.58■□□□□ 0.88
USP1O94782 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
USP1O94782 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
USP1O94782 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
USP1O94782 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP1O94782 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms