Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SSX4O60224 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SSX4O60224 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
SSX4O60224 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
SSX4O60224 HLA-L-209ENST00000420110 1011 ntBASIC18.44■□□□□ 0.54
SSX4O60224 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SSX4O60224 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SSX4O60224 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
SSX4O60224 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
SSX4O60224 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SSX4O60224 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SSX4O60224 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC18.44■□□□□ 0.54
SSX4O60224 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC18.43■□□□□ 0.54
SSX4O60224 AC004854.2-201ENST00000608450 1441 ntBASIC18.43■□□□□ 0.54
SSX4O60224 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SSX4O60224 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SSX4O60224 SMG8-203ENST00000578922 2178 ntBASIC18.43■□□□□ 0.54
SSX4O60224 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SSX4O60224 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
SSX4O60224 STX7-201ENST00000367937 1090 ntTSL 5 BASIC18.43■□□□□ 0.54
SSX4O60224 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC18.43■□□□□ 0.54
SSX4O60224 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC18.43■□□□□ 0.54
SSX4O60224 AC006015.1-201ENST00000429970 570 ntBASIC18.43■□□□□ 0.54
SSX4O60224 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC18.43■□□□□ 0.54
SSX4O60224 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC18.43■□□□□ 0.54
SSX4O60224 AP004607.4-201ENST00000530158 1459 ntBASIC18.43■□□□□ 0.54
SSX4O60224 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SSX4O60224 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SSX4O60224 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.43■□□□□ 0.54
SSX4O60224 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SSX4O60224 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SSX4O60224 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SSX4O60224 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SSX4O60224 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
SSX4O60224 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
SSX4O60224 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.43■□□□□ 0.54
SSX4O60224 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SSX4O60224 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
SSX4O60224 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SSX4O60224 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
SSX4O60224 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SSX4O60224 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
SSX4O60224 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
SSX4O60224 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
SSX4O60224 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SSX4O60224 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SSX4O60224 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
SSX4O60224 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SSX4O60224 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
SSX4O60224 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC18.42■□□□□ 0.54
SSX4O60224 TK2-208ENST00000545043 1120 ntTSL 2 BASIC18.42■□□□□ 0.54
SSX4O60224 SMUG1P1-201ENST00000590640 811 ntBASIC18.42■□□□□ 0.54
SSX4O60224 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
SSX4O60224 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SSX4O60224 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC18.42■□□□□ 0.54
SSX4O60224 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC18.42■□□□□ 0.54
SSX4O60224 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SSX4O60224 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
SSX4O60224 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SSX4O60224 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SSX4O60224 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
SSX4O60224 DYM-203ENST00000442713 2147 ntTSL 2 BASIC18.41■□□□□ 0.54
SSX4O60224 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SSX4O60224 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
SSX4O60224 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
SSX4O60224 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
SSX4O60224 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SSX4O60224 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC18.41■□□□□ 0.54
SSX4O60224 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC18.41■□□□□ 0.54
SSX4O60224 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SSX4O60224 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.41■□□□□ 0.54
SSX4O60224 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SSX4O60224 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SSX4O60224 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
SSX4O60224 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SSX4O60224 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SSX4O60224 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SSX4O60224 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
SSX4O60224 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
SSX4O60224 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SSX4O60224 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
SSX4O60224 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.4■□□□□ 0.54
SSX4O60224 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SSX4O60224 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SSX4O60224 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SSX4O60224 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SSX4O60224 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
SSX4O60224 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC18.4■□□□□ 0.54
SSX4O60224 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC18.4■□□□□ 0.54
SSX4O60224 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
SSX4O60224 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
SSX4O60224 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
SSX4O60224 HSCB-202ENST00000398941 955 ntTSL 2 BASIC18.4■□□□□ 0.54
SSX4O60224 KRT19P1-201ENST00000405746 1186 ntBASIC18.4■□□□□ 0.54
SSX4O60224 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SSX4O60224 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC18.4■□□□□ 0.54
SSX4O60224 GXYLT1P5-201ENST00000614548 1189 ntBASIC18.4■□□□□ 0.54
SSX4O60224 BID-214ENST00000617586 542 ntTSL 5 BASIC18.4■□□□□ 0.54
SSX4O60224 AC073111.5-205ENST00000641717 521 ntBASIC18.4■□□□□ 0.54
SSX4O60224 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms