Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SGCEO43556 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
SGCEO43556 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC17.99■□□□□ 0.47
SGCEO43556 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
SGCEO43556 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC17.99■□□□□ 0.47
SGCEO43556 HSCB-202ENST00000398941 955 ntTSL 2 BASIC17.99■□□□□ 0.47
SGCEO43556 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SGCEO43556 CD44-222ENST00000526025 1052 ntTSL 2 BASIC17.99■□□□□ 0.47
SGCEO43556 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
SGCEO43556 AC010536.3-201ENST00000620306 533 ntBASIC17.99■□□□□ 0.47
SGCEO43556 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC17.99■□□□□ 0.47
SGCEO43556 AC007225.1-201ENST00000566331 1836 ntBASIC17.99■□□□□ 0.47
SGCEO43556 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SGCEO43556 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC17.99■□□□□ 0.47
SGCEO43556 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SGCEO43556 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SGCEO43556 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SGCEO43556 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SGCEO43556 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SGCEO43556 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
SGCEO43556 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC17.99■□□□□ 0.47
SGCEO43556 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
SGCEO43556 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC17.99■□□□□ 0.47
SGCEO43556 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC17.99■□□□□ 0.47
SGCEO43556 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SGCEO43556 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SGCEO43556 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SGCEO43556 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC17.98■□□□□ 0.47
SGCEO43556 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
SGCEO43556 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SGCEO43556 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SGCEO43556 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SGCEO43556 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC17.98■□□□□ 0.47
SGCEO43556 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
SGCEO43556 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC17.98■□□□□ 0.47
SGCEO43556 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
SGCEO43556 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SGCEO43556 FP700111.2-201ENST00000619190 1892 ntBASIC17.98■□□□□ 0.47
SGCEO43556 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
SGCEO43556 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SGCEO43556 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC17.98■□□□□ 0.47
SGCEO43556 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
SGCEO43556 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC17.98■□□□□ 0.47
SGCEO43556 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SGCEO43556 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
SGCEO43556 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
SGCEO43556 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SGCEO43556 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
SGCEO43556 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
SGCEO43556 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SGCEO43556 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SGCEO43556 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
SGCEO43556 AC007322.3-201ENST00000426526 701 ntBASIC17.97■□□□□ 0.47
SGCEO43556 CDV3P1-201ENST00000471403 739 ntBASIC17.97■□□□□ 0.47
SGCEO43556 TERF1P5-201ENST00000477545 1207 ntBASIC17.97■□□□□ 0.47
SGCEO43556 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SGCEO43556 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC17.97■□□□□ 0.47
SGCEO43556 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC17.97■□□□□ 0.47
SGCEO43556 WWOX-218ENST00000627394 894 ntTSL 5 BASIC17.97■□□□□ 0.47
SGCEO43556 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC17.97■□□□□ 0.47
SGCEO43556 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
SGCEO43556 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SGCEO43556 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
SGCEO43556 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC17.97■□□□□ 0.47
SGCEO43556 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC17.96■□□□□ 0.47
SGCEO43556 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
SGCEO43556 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC17.96■□□□□ 0.47
SGCEO43556 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
SGCEO43556 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
SGCEO43556 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
SGCEO43556 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
SGCEO43556 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SGCEO43556 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SGCEO43556 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
SGCEO43556 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SGCEO43556 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SGCEO43556 MIR935-201ENST00000401179 91 ntBASIC17.96■□□□□ 0.47
SGCEO43556 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC17.96■□□□□ 0.47
SGCEO43556 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC17.96■□□□□ 0.47
SGCEO43556 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SGCEO43556 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC17.96■□□□□ 0.47
SGCEO43556 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
SGCEO43556 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SGCEO43556 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SGCEO43556 AC027702.1-201ENST00000563810 1770 ntBASIC17.96■□□□□ 0.47
SGCEO43556 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC17.96■□□□□ 0.47
SGCEO43556 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
SGCEO43556 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.46
SGCEO43556 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC17.96■□□□□ 0.46
SGCEO43556 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
SGCEO43556 AC007952.6-201ENST00000573168 2673 ntBASIC17.95■□□□□ 0.46
SGCEO43556 AC003957.1-201ENST00000625108 2673 ntBASIC17.95■□□□□ 0.46
SGCEO43556 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC17.95■□□□□ 0.46
SGCEO43556 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
SGCEO43556 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SGCEO43556 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
SGCEO43556 FEM1AP1-201ENST00000431297 1995 ntBASIC17.95■□□□□ 0.46
SGCEO43556 AL157384.1-201ENST00000445995 2473 ntBASIC17.95■□□□□ 0.46
SGCEO43556 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SGCEO43556 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms