Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC23.55■■□□□ 1.36
CLCF1Q9UBD9 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC23.54■■□□□ 1.36
CLCF1Q9UBD9 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
CLCF1Q9UBD9 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CLCF1Q9UBD9 PVT1-219ENST00000523427 938 ntTSL 3 BASIC23.52■■□□□ 1.36
CLCF1Q9UBD9 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC23.52■■□□□ 1.36
CLCF1Q9UBD9 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
CLCF1Q9UBD9 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC23.5■■□□□ 1.35
CLCF1Q9UBD9 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CLCF1Q9UBD9 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CLCF1Q9UBD9 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC23.5■■□□□ 1.35
CLCF1Q9UBD9 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CLCF1Q9UBD9 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC23.49■■□□□ 1.35
CLCF1Q9UBD9 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CLCF1Q9UBD9 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC23.48■■□□□ 1.35
CLCF1Q9UBD9 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC23.48■■□□□ 1.35
CLCF1Q9UBD9 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CLCF1Q9UBD9 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
CLCF1Q9UBD9 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC23.47■■□□□ 1.35
CLCF1Q9UBD9 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
CLCF1Q9UBD9 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC23.47■■□□□ 1.35
CLCF1Q9UBD9 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC23.46■■□□□ 1.35
CLCF1Q9UBD9 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
CLCF1Q9UBD9 AC010864.1-201ENST00000609407 1511 ntBASIC23.46■■□□□ 1.35
CLCF1Q9UBD9 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
CLCF1Q9UBD9 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC23.45■■□□□ 1.34
CLCF1Q9UBD9 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC23.45■■□□□ 1.34
CLCF1Q9UBD9 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC23.44■■□□□ 1.34
CLCF1Q9UBD9 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
CLCF1Q9UBD9 EI24-212ENST00000615917 1407 ntTSL 2 BASIC23.42■■□□□ 1.34
CLCF1Q9UBD9 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
CLCF1Q9UBD9 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC23.42■■□□□ 1.34
CLCF1Q9UBD9 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC23.42■■□□□ 1.34
CLCF1Q9UBD9 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC23.41■■□□□ 1.34
CLCF1Q9UBD9 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
CLCF1Q9UBD9 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
CLCF1Q9UBD9 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
CLCF1Q9UBD9 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC23.4■■□□□ 1.34
CLCF1Q9UBD9 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
CLCF1Q9UBD9 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC23.39■■□□□ 1.33
CLCF1Q9UBD9 LINC01971-201ENST00000617888 1048 ntBASIC23.38■■□□□ 1.33
CLCF1Q9UBD9 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CLCF1Q9UBD9 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC23.36■■□□□ 1.33
CLCF1Q9UBD9 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CLCF1Q9UBD9 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC23.35■■□□□ 1.33
CLCF1Q9UBD9 HLA-V-202ENST00000446817 847 ntBASIC23.35■■□□□ 1.33
CLCF1Q9UBD9 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC23.35■■□□□ 1.33
CLCF1Q9UBD9 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC23.35■■□□□ 1.33
CLCF1Q9UBD9 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC23.34■■□□□ 1.33
CLCF1Q9UBD9 MACF1-219ENST00000484793 834 ntTSL 2 BASIC23.34■■□□□ 1.33
CLCF1Q9UBD9 MBP-237ENST00000579129 1052 ntTSL 5 BASIC23.34■■□□□ 1.33
CLCF1Q9UBD9 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC23.33■■□□□ 1.33
CLCF1Q9UBD9 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC23.33■■□□□ 1.33
CLCF1Q9UBD9 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CLCF1Q9UBD9 RNF166-209ENST00000567844 633 ntTSL 5 BASIC23.32■■□□□ 1.32
CLCF1Q9UBD9 DUX4L11-201ENST00000611504 1267 ntBASIC23.32■■□□□ 1.32
CLCF1Q9UBD9 DUX4L12-201ENST00000614593 1267 ntBASIC23.32■■□□□ 1.32
CLCF1Q9UBD9 DUX4L14-201ENST00000621227 1267 ntBASIC23.32■■□□□ 1.32
CLCF1Q9UBD9 AL135925.1-201ENST00000605920 1701 ntBASIC23.32■■□□□ 1.32
CLCF1Q9UBD9 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CLCF1Q9UBD9 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC23.3■■□□□ 1.32
CLCF1Q9UBD9 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC23.29■■□□□ 1.32
CLCF1Q9UBD9 CALM3-209ENST00000597743 577 ntTSL 4 BASIC23.29■■□□□ 1.32
CLCF1Q9UBD9 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CLCF1Q9UBD9 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CLCF1Q9UBD9 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CLCF1Q9UBD9 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CLCF1Q9UBD9 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CLCF1Q9UBD9 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CLCF1Q9UBD9 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CLCF1Q9UBD9 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC23.27■■□□□ 1.32
CLCF1Q9UBD9 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC23.27■■□□□ 1.32
CLCF1Q9UBD9 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC23.27■■□□□ 1.32
CLCF1Q9UBD9 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CLCF1Q9UBD9 AGPS-202ENST00000409888 815 ntTSL 4 BASIC23.26■■□□□ 1.31
CLCF1Q9UBD9 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC23.25■■□□□ 1.31
CLCF1Q9UBD9 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC23.25■■□□□ 1.31
CLCF1Q9UBD9 MIR3648-2-201ENST00000581792 180 ntBASIC23.25■■□□□ 1.31
CLCF1Q9UBD9 MIR3648-1-201ENST00000615959 180 ntBASIC23.25■■□□□ 1.31
CLCF1Q9UBD9 LINC00273-201ENST00000539813 1452 ntBASIC23.24■■□□□ 1.31
CLCF1Q9UBD9 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CLCF1Q9UBD9 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
CLCF1Q9UBD9 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC23.24■■□□□ 1.31
CLCF1Q9UBD9 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC23.24■■□□□ 1.31
CLCF1Q9UBD9 GDI1-215ENST00000630693 786 ntTSL 4 BASIC23.24■■□□□ 1.31
CLCF1Q9UBD9 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
CLCF1Q9UBD9 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CLCF1Q9UBD9 RPS2-202ENST00000526522 924 ntTSL 2 BASIC23.23■■□□□ 1.31
CLCF1Q9UBD9 CR559946.2-201ENST00000623684 991 ntBASIC23.23■■□□□ 1.31
CLCF1Q9UBD9 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC23.23■■□□□ 1.31
CLCF1Q9UBD9 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
CLCF1Q9UBD9 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
CLCF1Q9UBD9 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
CLCF1Q9UBD9 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CLCF1Q9UBD9 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC23.22■■□□□ 1.31
CLCF1Q9UBD9 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
CLCF1Q9UBD9 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC23.22■■□□□ 1.31
CLCF1Q9UBD9 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
CLCF1Q9UBD9 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC23.21■■□□□ 1.31
CLCF1Q9UBD9 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms