Protein–RNA interactions for Protein: Q9H211

CDT1, DNA replication factor Cdt1, humanhuman

Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1Q9H211 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC28.78■■■□□ 2.2
CDT1Q9H211 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC28.78■■■□□ 2.2
CDT1Q9H211 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC28.76■■■□□ 2.19
CDT1Q9H211 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC28.76■■■□□ 2.19
CDT1Q9H211 CIB2-204ENST00000557846 934 ntTSL 3 BASIC28.76■■■□□ 2.19
CDT1Q9H211 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
CDT1Q9H211 AC010864.1-201ENST00000609407 1511 ntBASIC28.75■■■□□ 2.19
CDT1Q9H211 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
CDT1Q9H211 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC28.75■■■□□ 2.19
CDT1Q9H211 ABHD17AP4-201ENST00000411545 909 ntBASIC28.74■■■□□ 2.19
CDT1Q9H211 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC28.74■■■□□ 2.19
CDT1Q9H211 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC28.74■■■□□ 2.19
CDT1Q9H211 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC28.73■■■□□ 2.19
CDT1Q9H211 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
CDT1Q9H211 HGH1-207ENST00000628266 258 ntTSL 5 BASIC28.71■■■□□ 2.19
CDT1Q9H211 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC28.71■■■□□ 2.19
CDT1Q9H211 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
CDT1Q9H211 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC28.7■■■□□ 2.18
CDT1Q9H211 DUX4L29-201ENST00000425409 679 ntBASIC28.7■■■□□ 2.18
CDT1Q9H211 AC021231.2-201ENST00000594613 730 ntBASIC28.7■■■□□ 2.18
CDT1Q9H211 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC28.7■■■□□ 2.18
CDT1Q9H211 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC28.69■■■□□ 2.18
CDT1Q9H211 AL135925.1-201ENST00000605920 1701 ntBASIC28.69■■■□□ 2.18
CDT1Q9H211 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
CDT1Q9H211 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
CDT1Q9H211 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
CDT1Q9H211 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
CDT1Q9H211 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC28.68■■■□□ 2.18
CDT1Q9H211 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
CDT1Q9H211 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
CDT1Q9H211 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
CDT1Q9H211 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
CDT1Q9H211 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
CDT1Q9H211 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
CDT1Q9H211 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC28.65■■■□□ 2.18
CDT1Q9H211 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC28.64■■■□□ 2.18
CDT1Q9H211 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC28.62■■■□□ 2.17
CDT1Q9H211 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
CDT1Q9H211 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
CDT1Q9H211 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC28.62■■■□□ 2.17
CDT1Q9H211 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
CDT1Q9H211 ZNRF2P2-203ENST00000454624 420 ntBASIC28.61■■■□□ 2.17
CDT1Q9H211 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC28.61■■■□□ 2.17
CDT1Q9H211 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
CDT1Q9H211 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC28.59■■■□□ 2.17
CDT1Q9H211 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
CDT1Q9H211 ST7-205ENST00000393446 2114 ntTSL 5 BASIC28.59■■■□□ 2.17
CDT1Q9H211 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC28.58■■■□□ 2.17
CDT1Q9H211 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
CDT1Q9H211 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC28.58■■■□□ 2.17
CDT1Q9H211 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
CDT1Q9H211 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
CDT1Q9H211 MIR7108-201ENST00000614319 87 ntBASIC28.56■■■□□ 2.16
CDT1Q9H211 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC28.55■■■□□ 2.16
CDT1Q9H211 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC28.54■■■□□ 2.16
CDT1Q9H211 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC28.54■■■□□ 2.16
CDT1Q9H211 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC28.54■■■□□ 2.16
CDT1Q9H211 EI24-212ENST00000615917 1407 ntTSL 2 BASIC28.53■■■□□ 2.16
CDT1Q9H211 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
CDT1Q9H211 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
CDT1Q9H211 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
CDT1Q9H211 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC28.51■■■□□ 2.15
CDT1Q9H211 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC28.5■■■□□ 2.15
CDT1Q9H211 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC28.5■■■□□ 2.15
CDT1Q9H211 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC28.49■■■□□ 2.15
CDT1Q9H211 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
CDT1Q9H211 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
CDT1Q9H211 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
CDT1Q9H211 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC28.49■■■□□ 2.15
CDT1Q9H211 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC28.49■■■□□ 2.15
CDT1Q9H211 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC28.48■■■□□ 2.15
CDT1Q9H211 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
CDT1Q9H211 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC28.48■■■□□ 2.15
CDT1Q9H211 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC28.48■■■□□ 2.15
CDT1Q9H211 ST7-AS1-201ENST00000456775 1889 ntBASIC28.48■■■□□ 2.15
CDT1Q9H211 ST7-202ENST00000323984 2142 ntTSL 5 BASIC28.47■■■□□ 2.15
CDT1Q9H211 ST7-207ENST00000393449 2127 ntTSL 5 BASIC28.47■■■□□ 2.15
CDT1Q9H211 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
CDT1Q9H211 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC28.47■■■□□ 2.15
CDT1Q9H211 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
CDT1Q9H211 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC28.46■■■□□ 2.15
CDT1Q9H211 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
CDT1Q9H211 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
CDT1Q9H211 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.15
CDT1Q9H211 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.15
CDT1Q9H211 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
CDT1Q9H211 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC28.45■■■□□ 2.14
CDT1Q9H211 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC28.45■■■□□ 2.14
CDT1Q9H211 PVT1-219ENST00000523427 938 ntTSL 3 BASIC28.44■■■□□ 2.14
CDT1Q9H211 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
CDT1Q9H211 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
CDT1Q9H211 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC28.44■■■□□ 2.14
CDT1Q9H211 AC127502.1-201ENST00000399971 1502 ntBASIC28.43■■■□□ 2.14
CDT1Q9H211 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
CDT1Q9H211 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC28.43■■■□□ 2.14
CDT1Q9H211 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC28.43■■■□□ 2.14
CDT1Q9H211 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
CDT1Q9H211 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC28.41■■■□□ 2.14
CDT1Q9H211 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC28.4■■■□□ 2.14
CDT1Q9H211 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms