Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LINC00477Q96M19 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LINC00477Q96M19 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC19.57■□□□□ 0.72
LINC00477Q96M19 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LINC00477Q96M19 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC19.56■□□□□ 0.72
LINC00477Q96M19 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
LINC00477Q96M19 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LINC00477Q96M19 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LINC00477Q96M19 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LINC00477Q96M19 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC19.56■□□□□ 0.72
LINC00477Q96M19 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LINC00477Q96M19 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LINC00477Q96M19 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LINC00477Q96M19 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LINC00477Q96M19 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC19.55■□□□□ 0.72
LINC00477Q96M19 AC010864.1-201ENST00000609407 1511 ntBASIC19.55■□□□□ 0.72
LINC00477Q96M19 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LINC00477Q96M19 AL139393.2-201ENST00000608721 2025 ntBASIC19.54■□□□□ 0.72
LINC00477Q96M19 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
LINC00477Q96M19 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC19.54■□□□□ 0.72
LINC00477Q96M19 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC19.54■□□□□ 0.72
LINC00477Q96M19 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
LINC00477Q96M19 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC19.53■□□□□ 0.72
LINC00477Q96M19 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LINC00477Q96M19 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LINC00477Q96M19 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
LINC00477Q96M19 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
LINC00477Q96M19 AC142086.6-201ENST00000621154 1765 ntBASIC19.52■□□□□ 0.72
LINC00477Q96M19 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC19.52■□□□□ 0.72
LINC00477Q96M19 SETD8P1-201ENST00000623146 1180 ntBASIC19.52■□□□□ 0.72
LINC00477Q96M19 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LINC00477Q96M19 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
LINC00477Q96M19 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
LINC00477Q96M19 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LINC00477Q96M19 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC19.51■□□□□ 0.71
LINC00477Q96M19 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
LINC00477Q96M19 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC19.5■□□□□ 0.71
LINC00477Q96M19 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LINC00477Q96M19 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC19.5■□□□□ 0.71
LINC00477Q96M19 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC19.5■□□□□ 0.71
LINC00477Q96M19 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
LINC00477Q96M19 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
LINC00477Q96M19 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LINC00477Q96M19 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LINC00477Q96M19 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC19.49■□□□□ 0.71
LINC00477Q96M19 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LINC00477Q96M19 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LINC00477Q96M19 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
LINC00477Q96M19 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC19.47■□□□□ 0.71
LINC00477Q96M19 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LINC00477Q96M19 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LINC00477Q96M19 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
LINC00477Q96M19 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LINC00477Q96M19 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LINC00477Q96M19 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LINC00477Q96M19 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LINC00477Q96M19 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LINC00477Q96M19 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LINC00477Q96M19 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LINC00477Q96M19 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LINC00477Q96M19 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
LINC00477Q96M19 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC19.42■□□□□ 0.7
LINC00477Q96M19 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LINC00477Q96M19 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC19.42■□□□□ 0.7
LINC00477Q96M19 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
LINC00477Q96M19 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LINC00477Q96M19 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LINC00477Q96M19 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC19.41■□□□□ 0.7
LINC00477Q96M19 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LINC00477Q96M19 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.7
LINC00477Q96M19 DENR-202ENST00000455982 1052 ntTSL 5 BASIC19.39■□□□□ 0.69
LINC00477Q96M19 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LINC00477Q96M19 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LINC00477Q96M19 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC19.39■□□□□ 0.69
LINC00477Q96M19 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
LINC00477Q96M19 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
LINC00477Q96M19 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LINC00477Q96M19 EBPL-202ENST00000378268 680 ntTSL 3 BASIC19.38■□□□□ 0.69
LINC00477Q96M19 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
LINC00477Q96M19 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC19.38■□□□□ 0.69
LINC00477Q96M19 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LINC00477Q96M19 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LINC00477Q96M19 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC19.37■□□□□ 0.69
LINC00477Q96M19 DRD5P2-201ENST00000421395 2012 ntBASIC19.37■□□□□ 0.69
LINC00477Q96M19 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LINC00477Q96M19 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LINC00477Q96M19 AP004833.2-201ENST00000532228 1454 ntBASIC19.35■□□□□ 0.69
LINC00477Q96M19 AL391121.1-201ENST00000607967 1349 ntBASIC19.35■□□□□ 0.69
LINC00477Q96M19 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LINC00477Q96M19 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LINC00477Q96M19 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC19.35■□□□□ 0.69
LINC00477Q96M19 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
LINC00477Q96M19 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC19.35■□□□□ 0.69
LINC00477Q96M19 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LINC00477Q96M19 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LINC00477Q96M19 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
LINC00477Q96M19 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
LINC00477Q96M19 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
LINC00477Q96M19 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
LINC00477Q96M19 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 66.9 ms