Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC34.65■■■■□ 3.14
RTF1Q92541 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC34.64■■■■□ 3.14
RTF1Q92541 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC34.63■■■■□ 3.13
RTF1Q92541 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC34.63■■■■□ 3.13
RTF1Q92541 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC34.62■■■■□ 3.13
RTF1Q92541 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC34.61■■■■□ 3.13
RTF1Q92541 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC34.6■■■■□ 3.13
RTF1Q92541 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC34.59■■■■□ 3.13
RTF1Q92541 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC34.58■■■■□ 3.13
RTF1Q92541 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC34.58■■■■□ 3.13
RTF1Q92541 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC34.58■■■■□ 3.13
RTF1Q92541 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC34.57■■■■□ 3.12
RTF1Q92541 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC34.57■■■■□ 3.12
RTF1Q92541 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC34.55■■■■□ 3.12
RTF1Q92541 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC34.55■■■■□ 3.12
RTF1Q92541 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC34.53■■■■□ 3.12
RTF1Q92541 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC34.53■■■■□ 3.12
RTF1Q92541 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC34.52■■■■□ 3.12
RTF1Q92541 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC34.51■■■■□ 3.12
RTF1Q92541 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC34.51■■■■□ 3.12
RTF1Q92541 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC34.51■■■■□ 3.12
RTF1Q92541 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC34.51■■■■□ 3.11
RTF1Q92541 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC34.5■■■■□ 3.11
RTF1Q92541 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC34.5■■■■□ 3.11
RTF1Q92541 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC34.5■■■■□ 3.11
RTF1Q92541 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC34.5■■■■□ 3.11
RTF1Q92541 AC010864.1-201ENST00000609407 1511 ntBASIC34.49■■■■□ 3.11
RTF1Q92541 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC34.48■■■■□ 3.11
RTF1Q92541 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC34.48■■■■□ 3.11
RTF1Q92541 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC34.45■■■■□ 3.11
RTF1Q92541 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC34.44■■■■□ 3.1
RTF1Q92541 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC34.44■■■■□ 3.1
RTF1Q92541 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC34.44■■■■□ 3.1
RTF1Q92541 EI24-212ENST00000615917 1407 ntTSL 2 BASIC34.44■■■■□ 3.1
RTF1Q92541 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC34.44■■■■□ 3.1
RTF1Q92541 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC34.43■■■■□ 3.1
RTF1Q92541 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC34.43■■■■□ 3.1
RTF1Q92541 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC34.42■■■■□ 3.1
RTF1Q92541 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC34.41■■■■□ 3.1
RTF1Q92541 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC34.4■■■■□ 3.1
RTF1Q92541 HLA-V-202ENST00000446817 847 ntBASIC34.4■■■■□ 3.1
RTF1Q92541 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC34.39■■■■□ 3.1
RTF1Q92541 MBP-237ENST00000579129 1052 ntTSL 5 BASIC34.39■■■■□ 3.1
RTF1Q92541 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC34.38■■■■□ 3.09
RTF1Q92541 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC34.38■■■■□ 3.09
RTF1Q92541 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC34.38■■■■□ 3.09
RTF1Q92541 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC34.37■■■■□ 3.09
RTF1Q92541 LINC01971-201ENST00000617888 1048 ntBASIC34.37■■■■□ 3.09
RTF1Q92541 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC34.36■■■■□ 3.09
RTF1Q92541 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC34.34■■■■□ 3.09
RTF1Q92541 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC34.34■■■■□ 3.09
RTF1Q92541 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC34.33■■■■□ 3.09
RTF1Q92541 RNF166-209ENST00000567844 633 ntTSL 5 BASIC34.32■■■■□ 3.08
RTF1Q92541 DUX4L11-201ENST00000611504 1267 ntBASIC34.31■■■■□ 3.08
RTF1Q92541 DUX4L12-201ENST00000614593 1267 ntBASIC34.31■■■■□ 3.08
RTF1Q92541 DUX4L14-201ENST00000621227 1267 ntBASIC34.31■■■■□ 3.08
RTF1Q92541 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC34.31■■■■□ 3.08
RTF1Q92541 AL135925.1-201ENST00000605920 1701 ntBASIC34.3■■■■□ 3.08
RTF1Q92541 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC34.3■■■■□ 3.08
RTF1Q92541 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC34.29■■■■□ 3.08
RTF1Q92541 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC34.28■■■■□ 3.08
RTF1Q92541 MACF1-219ENST00000484793 834 ntTSL 2 BASIC34.28■■■■□ 3.08
RTF1Q92541 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC34.28■■■■□ 3.08
RTF1Q92541 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC34.27■■■■□ 3.08
RTF1Q92541 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC34.27■■■■□ 3.08
RTF1Q92541 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC34.26■■■■□ 3.07
RTF1Q92541 CALM3-209ENST00000597743 577 ntTSL 4 BASIC34.25■■■■□ 3.07
RTF1Q92541 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC34.24■■■■□ 3.07
RTF1Q92541 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC34.23■■■■□ 3.07
RTF1Q92541 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC34.23■■■■□ 3.07
RTF1Q92541 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC34.23■■■■□ 3.07
RTF1Q92541 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC34.23■■■■□ 3.07
RTF1Q92541 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC34.22■■■■□ 3.07
RTF1Q92541 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC34.22■■■■□ 3.07
RTF1Q92541 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC34.21■■■■□ 3.07
RTF1Q92541 AGPS-202ENST00000409888 815 ntTSL 4 BASIC34.21■■■■□ 3.07
RTF1Q92541 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC34.21■■■■□ 3.07
RTF1Q92541 MIR3648-2-201ENST00000581792 180 ntBASIC34.21■■■■□ 3.07
RTF1Q92541 MIR3648-1-201ENST00000615959 180 ntBASIC34.21■■■■□ 3.07
RTF1Q92541 GDI1-215ENST00000630693 786 ntTSL 4 BASIC34.21■■■■□ 3.07
RTF1Q92541 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC34.2■■■■□ 3.07
RTF1Q92541 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC34.2■■■■□ 3.06
RTF1Q92541 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC34.19■■■■□ 3.06
RTF1Q92541 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC34.19■■■■□ 3.06
RTF1Q92541 RPS2-202ENST00000526522 924 ntTSL 2 BASIC34.18■■■■□ 3.06
RTF1Q92541 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC34.18■■■■□ 3.06
RTF1Q92541 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC34.17■■■■□ 3.06
RTF1Q92541 AC016575.1-201ENST00000607026 382 ntBASIC34.17■■■■□ 3.06
RTF1Q92541 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC34.16■■■■□ 3.06
RTF1Q92541 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC34.16■■■■□ 3.06
RTF1Q92541 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC34.16■■■■□ 3.06
RTF1Q92541 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC34.16■■■■□ 3.06
RTF1Q92541 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC34.16■■■■□ 3.06
RTF1Q92541 LINC00273-201ENST00000539813 1452 ntBASIC34.15■■■■□ 3.06
RTF1Q92541 CR559946.2-201ENST00000623684 991 ntBASIC34.15■■■■□ 3.06
RTF1Q92541 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC34.14■■■■□ 3.06
RTF1Q92541 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC34.14■■■■□ 3.06
RTF1Q92541 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC34.14■■■■□ 3.06
RTF1Q92541 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC34.13■■■■□ 3.05
RTF1Q92541 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC34.13■■■■□ 3.05
Retrieved 100 of 98,524 protein–RNA pairs in 10.3 ms