Protein–RNA interactions for Protein: Q8NDZ2

SIMC1, SUMO-interacting motif-containing protein 1, humanhuman

Predictions only

Length 872 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIMC1Q8NDZ2 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
SIMC1Q8NDZ2 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC24.66■■□□□ 1.54
SIMC1Q8NDZ2 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
SIMC1Q8NDZ2 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
SIMC1Q8NDZ2 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC24.65■■□□□ 1.54
SIMC1Q8NDZ2 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
SIMC1Q8NDZ2 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
SIMC1Q8NDZ2 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.54
SIMC1Q8NDZ2 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC24.63■■□□□ 1.53
SIMC1Q8NDZ2 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC24.63■■□□□ 1.53
SIMC1Q8NDZ2 AC010864.1-201ENST00000609407 1511 ntBASIC24.63■■□□□ 1.53
SIMC1Q8NDZ2 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC24.63■■□□□ 1.53
SIMC1Q8NDZ2 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC24.63■■□□□ 1.53
SIMC1Q8NDZ2 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC24.63■■□□□ 1.53
SIMC1Q8NDZ2 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
SIMC1Q8NDZ2 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC24.63■■□□□ 1.53
SIMC1Q8NDZ2 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
SIMC1Q8NDZ2 NRG1-221ENST00000614767 762 ntTSL 5 BASIC24.62■■□□□ 1.53
SIMC1Q8NDZ2 DUX4L28-201ENST00000623687 678 ntBASIC24.62■■□□□ 1.53
SIMC1Q8NDZ2 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
SIMC1Q8NDZ2 AC005559.1-201ENST00000589661 871 ntBASIC24.61■■□□□ 1.53
SIMC1Q8NDZ2 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC24.61■■□□□ 1.53
SIMC1Q8NDZ2 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
SIMC1Q8NDZ2 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
SIMC1Q8NDZ2 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC24.6■■□□□ 1.53
SIMC1Q8NDZ2 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC24.6■■□□□ 1.53
SIMC1Q8NDZ2 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
SIMC1Q8NDZ2 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
SIMC1Q8NDZ2 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
SIMC1Q8NDZ2 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC24.59■■□□□ 1.53
SIMC1Q8NDZ2 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC24.59■■□□□ 1.53
SIMC1Q8NDZ2 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC24.58■■□□□ 1.53
SIMC1Q8NDZ2 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC24.58■■□□□ 1.52
SIMC1Q8NDZ2 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC24.58■■□□□ 1.52
SIMC1Q8NDZ2 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC24.57■■□□□ 1.52
SIMC1Q8NDZ2 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
SIMC1Q8NDZ2 ABCB10P3-201ENST00000561950 2166 ntBASIC24.56■■□□□ 1.52
SIMC1Q8NDZ2 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC24.56■■□□□ 1.52
SIMC1Q8NDZ2 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
SIMC1Q8NDZ2 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
SIMC1Q8NDZ2 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
SIMC1Q8NDZ2 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC24.55■■□□□ 1.52
SIMC1Q8NDZ2 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
SIMC1Q8NDZ2 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
SIMC1Q8NDZ2 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
SIMC1Q8NDZ2 AL162393.1-201ENST00000437852 946 ntBASIC24.54■■□□□ 1.52
SIMC1Q8NDZ2 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC24.53■■□□□ 1.52
SIMC1Q8NDZ2 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
SIMC1Q8NDZ2 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
SIMC1Q8NDZ2 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
SIMC1Q8NDZ2 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
SIMC1Q8NDZ2 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC24.52■■□□□ 1.52
SIMC1Q8NDZ2 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC24.51■■□□□ 1.51
SIMC1Q8NDZ2 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
SIMC1Q8NDZ2 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC24.5■■□□□ 1.51
SIMC1Q8NDZ2 RPS2-209ENST00000529806 993 ntTSL 3 BASIC24.5■■□□□ 1.51
SIMC1Q8NDZ2 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
SIMC1Q8NDZ2 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC24.49■■□□□ 1.51
SIMC1Q8NDZ2 AP006261.1-201ENST00000584783 668 ntBASIC24.49■■□□□ 1.51
SIMC1Q8NDZ2 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC24.49■■□□□ 1.51
SIMC1Q8NDZ2 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC24.49■■□□□ 1.51
SIMC1Q8NDZ2 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
SIMC1Q8NDZ2 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
SIMC1Q8NDZ2 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
SIMC1Q8NDZ2 MIR3665-201ENST00000578708 105 ntBASIC24.48■■□□□ 1.51
SIMC1Q8NDZ2 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC24.47■■□□□ 1.51
SIMC1Q8NDZ2 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
SIMC1Q8NDZ2 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC24.47■■□□□ 1.51
SIMC1Q8NDZ2 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC24.47■■□□□ 1.51
SIMC1Q8NDZ2 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
SIMC1Q8NDZ2 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC24.47■■□□□ 1.51
SIMC1Q8NDZ2 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
SIMC1Q8NDZ2 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC24.46■■□□□ 1.51
SIMC1Q8NDZ2 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
SIMC1Q8NDZ2 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC24.45■■□□□ 1.51
SIMC1Q8NDZ2 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC24.45■■□□□ 1.5
SIMC1Q8NDZ2 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC24.45■■□□□ 1.5
SIMC1Q8NDZ2 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC24.45■■□□□ 1.5
SIMC1Q8NDZ2 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC24.44■■□□□ 1.5
SIMC1Q8NDZ2 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC24.44■■□□□ 1.5
SIMC1Q8NDZ2 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC24.44■■□□□ 1.5
SIMC1Q8NDZ2 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC24.43■■□□□ 1.5
SIMC1Q8NDZ2 AC087741.3-201ENST00000624270 1347 ntBASIC24.43■■□□□ 1.5
SIMC1Q8NDZ2 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC24.43■■□□□ 1.5
SIMC1Q8NDZ2 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
SIMC1Q8NDZ2 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC24.42■■□□□ 1.5
SIMC1Q8NDZ2 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
SIMC1Q8NDZ2 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
SIMC1Q8NDZ2 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
SIMC1Q8NDZ2 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
SIMC1Q8NDZ2 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
SIMC1Q8NDZ2 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
SIMC1Q8NDZ2 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
SIMC1Q8NDZ2 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
SIMC1Q8NDZ2 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC24.4■■□□□ 1.5
SIMC1Q8NDZ2 RPS2P35-201ENST00000443417 897 ntBASIC24.4■■□□□ 1.5
SIMC1Q8NDZ2 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
SIMC1Q8NDZ2 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
SIMC1Q8NDZ2 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC24.4■■□□□ 1.5
SIMC1Q8NDZ2 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms