Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC33.19■■■□□ 2.9
UBE3BQ7Z3V4 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC33.19■■■□□ 2.9
UBE3BQ7Z3V4 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC33.19■■■□□ 2.9
UBE3BQ7Z3V4 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC33.19■■■□□ 2.9
UBE3BQ7Z3V4 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC33.19■■■□□ 2.9
UBE3BQ7Z3V4 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC33.18■■■□□ 2.9
UBE3BQ7Z3V4 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC33.17■■■□□ 2.9
UBE3BQ7Z3V4 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC33.17■■■□□ 2.9
UBE3BQ7Z3V4 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
UBE3BQ7Z3V4 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
UBE3BQ7Z3V4 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC33.15■■■□□ 2.9
UBE3BQ7Z3V4 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC33.14■■■□□ 2.9
UBE3BQ7Z3V4 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC33.14■■■□□ 2.9
UBE3BQ7Z3V4 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC33.14■■■□□ 2.89
UBE3BQ7Z3V4 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC33.13■■■□□ 2.89
UBE3BQ7Z3V4 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC33.12■■■□□ 2.89
UBE3BQ7Z3V4 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC33.12■■■□□ 2.89
UBE3BQ7Z3V4 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC33.11■■■□□ 2.89
UBE3BQ7Z3V4 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC33.11■■■□□ 2.89
UBE3BQ7Z3V4 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC33.11■■■□□ 2.89
UBE3BQ7Z3V4 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC33.11■■■□□ 2.89
UBE3BQ7Z3V4 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC33.1■■■□□ 2.89
UBE3BQ7Z3V4 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC33.09■■■□□ 2.89
UBE3BQ7Z3V4 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC33.09■■■□□ 2.89
UBE3BQ7Z3V4 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC33.08■■■□□ 2.89
UBE3BQ7Z3V4 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC33.08■■■□□ 2.89
UBE3BQ7Z3V4 AC010864.1-201ENST00000609407 1511 ntBASIC33.07■■■□□ 2.88
UBE3BQ7Z3V4 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC33.06■■■□□ 2.88
UBE3BQ7Z3V4 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC33.05■■■□□ 2.88
UBE3BQ7Z3V4 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC33.05■■■□□ 2.88
UBE3BQ7Z3V4 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC33.03■■■□□ 2.88
UBE3BQ7Z3V4 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC33.03■■■□□ 2.88
UBE3BQ7Z3V4 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC33.03■■■□□ 2.88
UBE3BQ7Z3V4 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC33.02■■■□□ 2.88
UBE3BQ7Z3V4 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC33.01■■■□□ 2.87
UBE3BQ7Z3V4 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
UBE3BQ7Z3V4 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC33■■■□□ 2.87
UBE3BQ7Z3V4 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC33■■■□□ 2.87
UBE3BQ7Z3V4 HLA-V-202ENST00000446817 847 ntBASIC32.99■■■□□ 2.87
UBE3BQ7Z3V4 MBP-237ENST00000579129 1052 ntTSL 5 BASIC32.99■■■□□ 2.87
UBE3BQ7Z3V4 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC32.98■■■□□ 2.87
UBE3BQ7Z3V4 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC32.98■■■□□ 2.87
UBE3BQ7Z3V4 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC32.96■■■□□ 2.87
UBE3BQ7Z3V4 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC32.96■■■□□ 2.87
UBE3BQ7Z3V4 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.87
UBE3BQ7Z3V4 EI24-212ENST00000615917 1407 ntTSL 2 BASIC32.95■■■□□ 2.87
UBE3BQ7Z3V4 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC32.95■■■□□ 2.87
UBE3BQ7Z3V4 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
UBE3BQ7Z3V4 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC32.93■■■□□ 2.86
UBE3BQ7Z3V4 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC32.92■■■□□ 2.86
UBE3BQ7Z3V4 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC32.92■■■□□ 2.86
UBE3BQ7Z3V4 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC32.92■■■□□ 2.86
UBE3BQ7Z3V4 LINC01971-201ENST00000617888 1048 ntBASIC32.92■■■□□ 2.86
UBE3BQ7Z3V4 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
UBE3BQ7Z3V4 RNF166-209ENST00000567844 633 ntTSL 5 BASIC32.9■■■□□ 2.86
UBE3BQ7Z3V4 AL135925.1-201ENST00000605920 1701 ntBASIC32.88■■■□□ 2.85
UBE3BQ7Z3V4 RPS2-202ENST00000526522 924 ntTSL 2 BASIC32.87■■■□□ 2.85
UBE3BQ7Z3V4 DUX4L11-201ENST00000611504 1267 ntBASIC32.87■■■□□ 2.85
UBE3BQ7Z3V4 DUX4L12-201ENST00000614593 1267 ntBASIC32.87■■■□□ 2.85
UBE3BQ7Z3V4 DUX4L14-201ENST00000621227 1267 ntBASIC32.87■■■□□ 2.85
UBE3BQ7Z3V4 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC32.86■■■□□ 2.85
UBE3BQ7Z3V4 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC32.86■■■□□ 2.85
UBE3BQ7Z3V4 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC32.86■■■□□ 2.85
UBE3BQ7Z3V4 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC32.85■■■□□ 2.85
UBE3BQ7Z3V4 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC32.85■■■□□ 2.85
UBE3BQ7Z3V4 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC32.84■■■□□ 2.85
UBE3BQ7Z3V4 MACF1-219ENST00000484793 834 ntTSL 2 BASIC32.84■■■□□ 2.85
UBE3BQ7Z3V4 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC32.82■■■□□ 2.85
UBE3BQ7Z3V4 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC32.82■■■□□ 2.84
UBE3BQ7Z3V4 CALM3-209ENST00000597743 577 ntTSL 4 BASIC32.81■■■□□ 2.84
UBE3BQ7Z3V4 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
UBE3BQ7Z3V4 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
UBE3BQ7Z3V4 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC32.8■■■□□ 2.84
UBE3BQ7Z3V4 MIR3648-2-201ENST00000581792 180 ntBASIC32.8■■■□□ 2.84
UBE3BQ7Z3V4 MIR3648-1-201ENST00000615959 180 ntBASIC32.8■■■□□ 2.84
UBE3BQ7Z3V4 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC32.8■■■□□ 2.84
UBE3BQ7Z3V4 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC32.8■■■□□ 2.84
UBE3BQ7Z3V4 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC32.8■■■□□ 2.84
UBE3BQ7Z3V4 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
UBE3BQ7Z3V4 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC32.78■■■□□ 2.84
UBE3BQ7Z3V4 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC32.78■■■□□ 2.84
UBE3BQ7Z3V4 AC016575.1-201ENST00000607026 382 ntBASIC32.78■■■□□ 2.84
UBE3BQ7Z3V4 CR559946.2-201ENST00000623684 991 ntBASIC32.78■■■□□ 2.84
UBE3BQ7Z3V4 GDI1-215ENST00000630693 786 ntTSL 4 BASIC32.78■■■□□ 2.84
UBE3BQ7Z3V4 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
UBE3BQ7Z3V4 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC32.76■■■□□ 2.84
UBE3BQ7Z3V4 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC32.76■■■□□ 2.83
UBE3BQ7Z3V4 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC32.75■■■□□ 2.83
UBE3BQ7Z3V4 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC32.75■■■□□ 2.83
UBE3BQ7Z3V4 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC32.75■■■□□ 2.83
UBE3BQ7Z3V4 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC32.74■■■□□ 2.83
UBE3BQ7Z3V4 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC32.73■■■□□ 2.83
UBE3BQ7Z3V4 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
UBE3BQ7Z3V4 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC32.73■■■□□ 2.83
UBE3BQ7Z3V4 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC32.73■■■□□ 2.83
UBE3BQ7Z3V4 AC127502.1-201ENST00000399971 1502 ntBASIC32.72■■■□□ 2.83
UBE3BQ7Z3V4 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC32.72■■■□□ 2.83
UBE3BQ7Z3V4 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC32.72■■■□□ 2.83
UBE3BQ7Z3V4 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC32.72■■■□□ 2.83
UBE3BQ7Z3V4 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC32.72■■■□□ 2.83
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms