Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
CSPG4Q6UVK1 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CSPG4Q6UVK1 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CSPG4Q6UVK1 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC22.06■■□□□ 1.12
CSPG4Q6UVK1 ABHD17AP5-201ENST00000580133 923 ntBASIC22.06■■□□□ 1.12
CSPG4Q6UVK1 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
CSPG4Q6UVK1 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
CSPG4Q6UVK1 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CSPG4Q6UVK1 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CSPG4Q6UVK1 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CSPG4Q6UVK1 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
CSPG4Q6UVK1 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC22.03■■□□□ 1.12
CSPG4Q6UVK1 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CSPG4Q6UVK1 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
CSPG4Q6UVK1 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC22■■□□□ 1.11
CSPG4Q6UVK1 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CSPG4Q6UVK1 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
CSPG4Q6UVK1 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CSPG4Q6UVK1 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
CSPG4Q6UVK1 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
CSPG4Q6UVK1 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
CSPG4Q6UVK1 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC21.98■■□□□ 1.11
CSPG4Q6UVK1 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CSPG4Q6UVK1 HES6-205ENST00000409356 528 ntTSL 2 BASIC21.98■■□□□ 1.11
CSPG4Q6UVK1 RNF126P1-201ENST00000567452 1320 ntBASIC21.98■■□□□ 1.11
CSPG4Q6UVK1 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
CSPG4Q6UVK1 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC21.97■■□□□ 1.11
CSPG4Q6UVK1 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC21.97■■□□□ 1.11
CSPG4Q6UVK1 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
CSPG4Q6UVK1 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
CSPG4Q6UVK1 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC21.94■■□□□ 1.1
CSPG4Q6UVK1 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC21.94■■□□□ 1.1
CSPG4Q6UVK1 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CSPG4Q6UVK1 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CSPG4Q6UVK1 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CSPG4Q6UVK1 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CSPG4Q6UVK1 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CSPG4Q6UVK1 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CSPG4Q6UVK1 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC21.92■■□□□ 1.1
CSPG4Q6UVK1 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
CSPG4Q6UVK1 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CSPG4Q6UVK1 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC21.9■■□□□ 1.1
CSPG4Q6UVK1 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
CSPG4Q6UVK1 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC21.89■■□□□ 1.1
CSPG4Q6UVK1 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC21.89■■□□□ 1.1
CSPG4Q6UVK1 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
CSPG4Q6UVK1 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC21.89■■□□□ 1.09
CSPG4Q6UVK1 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CSPG4Q6UVK1 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
CSPG4Q6UVK1 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC21.87■■□□□ 1.09
CSPG4Q6UVK1 CHML-204ENST00000638121 920 ntTSL 2 BASIC21.86■■□□□ 1.09
CSPG4Q6UVK1 GPX1-201ENST00000419349 1106 ntBASIC21.86■■□□□ 1.09
CSPG4Q6UVK1 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CSPG4Q6UVK1 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
CSPG4Q6UVK1 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC21.85■■□□□ 1.09
CSPG4Q6UVK1 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
CSPG4Q6UVK1 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
CSPG4Q6UVK1 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC21.84■■□□□ 1.09
CSPG4Q6UVK1 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CSPG4Q6UVK1 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC21.83■■□□□ 1.08
CSPG4Q6UVK1 EI24-212ENST00000615917 1407 ntTSL 2 BASIC21.82■■□□□ 1.08
CSPG4Q6UVK1 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC21.82■■□□□ 1.08
CSPG4Q6UVK1 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC21.82■■□□□ 1.08
CSPG4Q6UVK1 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
CSPG4Q6UVK1 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
CSPG4Q6UVK1 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
CSPG4Q6UVK1 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CSPG4Q6UVK1 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CSPG4Q6UVK1 TPT1-202ENST00000379055 948 ntTSL 2 BASIC21.8■■□□□ 1.08
CSPG4Q6UVK1 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
CSPG4Q6UVK1 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC21.8■■□□□ 1.08
CSPG4Q6UVK1 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CSPG4Q6UVK1 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CSPG4Q6UVK1 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CSPG4Q6UVK1 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CSPG4Q6UVK1 NTF6A-201ENST00000591175 560 ntBASIC21.8■■□□□ 1.08
CSPG4Q6UVK1 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CSPG4Q6UVK1 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CSPG4Q6UVK1 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CSPG4Q6UVK1 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CSPG4Q6UVK1 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CSPG4Q6UVK1 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
CSPG4Q6UVK1 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC21.79■■□□□ 1.08
CSPG4Q6UVK1 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC21.78■■□□□ 1.08
CSPG4Q6UVK1 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CSPG4Q6UVK1 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CSPG4Q6UVK1 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CSPG4Q6UVK1 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CSPG4Q6UVK1 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
CSPG4Q6UVK1 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.07
CSPG4Q6UVK1 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC21.77■■□□□ 1.07
CSPG4Q6UVK1 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
CSPG4Q6UVK1 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC21.77■■□□□ 1.07
CSPG4Q6UVK1 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CSPG4Q6UVK1 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC21.76■■□□□ 1.07
CSPG4Q6UVK1 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CSPG4Q6UVK1 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC21.75■■□□□ 1.07
CSPG4Q6UVK1 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC21.75■■□□□ 1.07
CSPG4Q6UVK1 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
CSPG4Q6UVK1 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms