Protein–RNA interactions for Protein: Q5ST30

VARS2, Valine--tRNA ligase, mitochondrial, humanhuman

Known RBP Predictions only

Length 1,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2Q5ST30 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
VARS2Q5ST30 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
VARS2Q5ST30 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
VARS2Q5ST30 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
VARS2Q5ST30 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
VARS2Q5ST30 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC28.14■■■□□ 2.1
VARS2Q5ST30 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
VARS2Q5ST30 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
VARS2Q5ST30 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC28.12■■■□□ 2.09
VARS2Q5ST30 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
VARS2Q5ST30 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC28.1■■■□□ 2.09
VARS2Q5ST30 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC28.1■■■□□ 2.09
VARS2Q5ST30 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC28.09■■■□□ 2.09
VARS2Q5ST30 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC28.09■■■□□ 2.09
VARS2Q5ST30 LINC01971-201ENST00000617888 1048 ntBASIC28.08■■■□□ 2.09
VARS2Q5ST30 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
VARS2Q5ST30 MACF1-219ENST00000484793 834 ntTSL 2 BASIC28.07■■■□□ 2.08
VARS2Q5ST30 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
VARS2Q5ST30 RNF166-209ENST00000567844 633 ntTSL 5 BASIC28.07■■■□□ 2.08
VARS2Q5ST30 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
VARS2Q5ST30 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
VARS2Q5ST30 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
VARS2Q5ST30 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC28.06■■■□□ 2.08
VARS2Q5ST30 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC28.06■■■□□ 2.08
VARS2Q5ST30 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
VARS2Q5ST30 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
VARS2Q5ST30 RPS2-202ENST00000526522 924 ntTSL 2 BASIC28.05■■■□□ 2.08
VARS2Q5ST30 EI24-212ENST00000615917 1407 ntTSL 2 BASIC28.04■■■□□ 2.08
VARS2Q5ST30 DUX4L11-201ENST00000611504 1267 ntBASIC28.04■■■□□ 2.08
VARS2Q5ST30 DUX4L12-201ENST00000614593 1267 ntBASIC28.04■■■□□ 2.08
VARS2Q5ST30 DUX4L14-201ENST00000621227 1267 ntBASIC28.04■■■□□ 2.08
VARS2Q5ST30 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC28.02■■■□□ 2.08
VARS2Q5ST30 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC28.02■■■□□ 2.08
VARS2Q5ST30 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
VARS2Q5ST30 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
VARS2Q5ST30 AC010864.1-201ENST00000609407 1511 ntBASIC28.01■■■□□ 2.07
VARS2Q5ST30 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC28■■■□□ 2.07
VARS2Q5ST30 MIR3648-2-201ENST00000581792 180 ntBASIC28■■■□□ 2.07
VARS2Q5ST30 MIR3648-1-201ENST00000615959 180 ntBASIC28■■■□□ 2.07
VARS2Q5ST30 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC27.99■■■□□ 2.07
VARS2Q5ST30 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC27.99■■■□□ 2.07
VARS2Q5ST30 GDI1-215ENST00000630693 786 ntTSL 4 BASIC27.99■■■□□ 2.07
VARS2Q5ST30 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC27.97■■■□□ 2.07
VARS2Q5ST30 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC27.97■■■□□ 2.07
VARS2Q5ST30 AC016575.1-201ENST00000607026 382 ntBASIC27.97■■■□□ 2.07
VARS2Q5ST30 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC27.97■■■□□ 2.07
VARS2Q5ST30 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC27.96■■■□□ 2.07
VARS2Q5ST30 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC27.96■■■□□ 2.07
VARS2Q5ST30 CR559946.2-201ENST00000623684 991 ntBASIC27.96■■■□□ 2.07
VARS2Q5ST30 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC27.96■■■□□ 2.07
VARS2Q5ST30 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC27.95■■■□□ 2.07
VARS2Q5ST30 MIR639-201ENST00000384974 98 ntBASIC27.95■■■□□ 2.06
VARS2Q5ST30 AGPS-202ENST00000409888 815 ntTSL 4 BASIC27.95■■■□□ 2.06
VARS2Q5ST30 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC27.95■■■□□ 2.06
VARS2Q5ST30 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC27.94■■■□□ 2.06
VARS2Q5ST30 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC27.93■■■□□ 2.06
VARS2Q5ST30 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC27.93■■■□□ 2.06
VARS2Q5ST30 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
VARS2Q5ST30 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC27.93■■■□□ 2.06
VARS2Q5ST30 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC27.93■■■□□ 2.06
VARS2Q5ST30 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC27.92■■■□□ 2.06
VARS2Q5ST30 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
VARS2Q5ST30 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC27.92■■■□□ 2.06
VARS2Q5ST30 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC27.92■■■□□ 2.06
VARS2Q5ST30 CALM3-209ENST00000597743 577 ntTSL 4 BASIC27.92■■■□□ 2.06
VARS2Q5ST30 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
VARS2Q5ST30 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
VARS2Q5ST30 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
VARS2Q5ST30 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC27.9■■■□□ 2.06
VARS2Q5ST30 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
VARS2Q5ST30 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
VARS2Q5ST30 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.06
VARS2Q5ST30 MIR4449-201ENST00000578365 66 ntBASIC27.89■■■□□ 2.06
VARS2Q5ST30 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
VARS2Q5ST30 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
VARS2Q5ST30 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
VARS2Q5ST30 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC27.87■■■□□ 2.05
VARS2Q5ST30 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
VARS2Q5ST30 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
VARS2Q5ST30 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
VARS2Q5ST30 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC27.86■■■□□ 2.05
VARS2Q5ST30 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC27.85■■■□□ 2.05
VARS2Q5ST30 DUX4L13-201ENST00000554103 1267 ntBASIC27.85■■■□□ 2.05
VARS2Q5ST30 DUX4L15-201ENST00000611059 1267 ntBASIC27.85■■■□□ 2.05
VARS2Q5ST30 DUX4L23-201ENST00000615195 1269 ntBASIC27.85■■■□□ 2.05
VARS2Q5ST30 DUX4L24-201ENST00000617576 1269 ntBASIC27.85■■■□□ 2.05
VARS2Q5ST30 DUX4L22-201ENST00000618238 1269 ntBASIC27.85■■■□□ 2.05
VARS2Q5ST30 DUX4L20-201ENST00000619712 1269 ntBASIC27.85■■■□□ 2.05
VARS2Q5ST30 DUX4L21-201ENST00000622058 1269 ntBASIC27.85■■■□□ 2.05
VARS2Q5ST30 DUX4L10-201ENST00000622460 1267 ntBASIC27.85■■■□□ 2.05
VARS2Q5ST30 DUX4L25-201ENST00000624915 1269 ntBASIC27.85■■■□□ 2.05
VARS2Q5ST30 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC27.85■■■□□ 2.05
VARS2Q5ST30 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
VARS2Q5ST30 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC27.84■■■□□ 2.05
VARS2Q5ST30 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC27.84■■■□□ 2.05
VARS2Q5ST30 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
VARS2Q5ST30 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC27.83■■■□□ 2.05
VARS2Q5ST30 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
VARS2Q5ST30 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.04
VARS2Q5ST30 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC27.83■■■□□ 2.04
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms