Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
HADHAP40939 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
HADHAP40939 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
HADHAP40939 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC26.5■■□□□ 1.83
HADHAP40939 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC26.49■■□□□ 1.83
HADHAP40939 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
HADHAP40939 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
HADHAP40939 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC26.49■■□□□ 1.83
HADHAP40939 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
HADHAP40939 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
HADHAP40939 MIR762-201ENST00000390236 83 ntBASIC26.48■■□□□ 1.83
HADHAP40939 CHML-205ENST00000638160 705 ntTSL 3 BASIC26.48■■□□□ 1.83
HADHAP40939 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC26.48■■□□□ 1.83
HADHAP40939 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
HADHAP40939 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC26.47■■□□□ 1.83
HADHAP40939 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC26.47■■□□□ 1.83
HADHAP40939 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
HADHAP40939 HNRNPLP2-201ENST00000568980 1570 ntBASIC26.46■■□□□ 1.83
HADHAP40939 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC26.45■■□□□ 1.82
HADHAP40939 AC139426.1-201ENST00000568218 2529 ntBASIC26.45■■□□□ 1.82
HADHAP40939 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
HADHAP40939 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC26.44■■□□□ 1.82
HADHAP40939 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC26.43■■□□□ 1.82
HADHAP40939 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC26.43■■□□□ 1.82
HADHAP40939 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC26.43■■□□□ 1.82
HADHAP40939 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
HADHAP40939 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC26.43■■□□□ 1.82
HADHAP40939 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC26.43■■□□□ 1.82
HADHAP40939 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
HADHAP40939 SHF-206ENST00000560471 2499 ntTSL 5 BASIC26.42■■□□□ 1.82
HADHAP40939 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC26.42■■□□□ 1.82
HADHAP40939 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
HADHAP40939 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
HADHAP40939 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC26.41■■□□□ 1.82
HADHAP40939 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC26.4■■□□□ 1.82
HADHAP40939 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC26.4■■□□□ 1.82
HADHAP40939 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
HADHAP40939 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC26.4■■□□□ 1.82
HADHAP40939 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
HADHAP40939 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
HADHAP40939 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC26.38■■□□□ 1.81
HADHAP40939 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC26.37■■□□□ 1.81
HADHAP40939 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
HADHAP40939 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC26.37■■□□□ 1.81
HADHAP40939 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
HADHAP40939 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
HADHAP40939 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC26.37■■□□□ 1.81
HADHAP40939 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
HADHAP40939 AC005559.1-201ENST00000589661 871 ntBASIC26.36■■□□□ 1.81
HADHAP40939 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC26.35■■□□□ 1.81
HADHAP40939 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
HADHAP40939 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
HADHAP40939 AC010864.1-201ENST00000609407 1511 ntBASIC26.34■■□□□ 1.81
HADHAP40939 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC26.34■■□□□ 1.81
HADHAP40939 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC26.34■■□□□ 1.81
HADHAP40939 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
HADHAP40939 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
HADHAP40939 RPS2-209ENST00000529806 993 ntTSL 3 BASIC26.32■■□□□ 1.8
HADHAP40939 AP006261.1-201ENST00000584783 668 ntBASIC26.31■■□□□ 1.8
HADHAP40939 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
HADHAP40939 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
HADHAP40939 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC26.3■■□□□ 1.8
HADHAP40939 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
HADHAP40939 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC26.29■■□□□ 1.8
HADHAP40939 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
HADHAP40939 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
HADHAP40939 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
HADHAP40939 MIR3665-201ENST00000578708 105 ntBASIC26.28■■□□□ 1.8
HADHAP40939 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC26.27■■□□□ 1.8
HADHAP40939 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
HADHAP40939 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
HADHAP40939 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
HADHAP40939 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC26.26■■□□□ 1.79
HADHAP40939 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
HADHAP40939 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC26.25■■□□□ 1.79
HADHAP40939 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
HADHAP40939 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
HADHAP40939 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
HADHAP40939 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
HADHAP40939 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
HADHAP40939 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
HADHAP40939 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC26.24■■□□□ 1.79
HADHAP40939 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC26.24■■□□□ 1.79
HADHAP40939 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
HADHAP40939 DUX4L28-201ENST00000623687 678 ntBASIC26.23■■□□□ 1.79
HADHAP40939 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
HADHAP40939 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC26.23■■□□□ 1.79
HADHAP40939 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
HADHAP40939 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC26.22■■□□□ 1.79
HADHAP40939 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC26.22■■□□□ 1.79
HADHAP40939 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
HADHAP40939 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC26.21■■□□□ 1.79
HADHAP40939 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC26.21■■□□□ 1.79
HADHAP40939 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
HADHAP40939 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
HADHAP40939 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC26.2■■□□□ 1.78
HADHAP40939 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
HADHAP40939 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC26.2■■□□□ 1.78
HADHAP40939 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC26.19■■□□□ 1.78
HADHAP40939 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC26.19■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms