Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
USH1CQ9Y6N9 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
USH1CQ9Y6N9 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
USH1CQ9Y6N9 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
USH1CQ9Y6N9 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC20.32■□□□□ 0.84
USH1CQ9Y6N9 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
USH1CQ9Y6N9 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
USH1CQ9Y6N9 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
USH1CQ9Y6N9 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
USH1CQ9Y6N9 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
USH1CQ9Y6N9 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
USH1CQ9Y6N9 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
USH1CQ9Y6N9 SLC47A1P1-202ENST00000449666 945 ntBASIC20.32■□□□□ 0.84
USH1CQ9Y6N9 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
USH1CQ9Y6N9 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.32■□□□□ 0.84
USH1CQ9Y6N9 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
USH1CQ9Y6N9 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
USH1CQ9Y6N9 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
USH1CQ9Y6N9 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
USH1CQ9Y6N9 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
USH1CQ9Y6N9 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
USH1CQ9Y6N9 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
USH1CQ9Y6N9 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
USH1CQ9Y6N9 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
USH1CQ9Y6N9 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USH1CQ9Y6N9 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USH1CQ9Y6N9 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
USH1CQ9Y6N9 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
USH1CQ9Y6N9 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
USH1CQ9Y6N9 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USH1CQ9Y6N9 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
USH1CQ9Y6N9 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USH1CQ9Y6N9 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USH1CQ9Y6N9 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
USH1CQ9Y6N9 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
USH1CQ9Y6N9 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
USH1CQ9Y6N9 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
USH1CQ9Y6N9 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USH1CQ9Y6N9 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USH1CQ9Y6N9 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
USH1CQ9Y6N9 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USH1CQ9Y6N9 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.3■□□□□ 0.84
USH1CQ9Y6N9 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
USH1CQ9Y6N9 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USH1CQ9Y6N9 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
USH1CQ9Y6N9 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
USH1CQ9Y6N9 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.3■□□□□ 0.84
USH1CQ9Y6N9 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
USH1CQ9Y6N9 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USH1CQ9Y6N9 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC20.3■□□□□ 0.84
USH1CQ9Y6N9 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.3■□□□□ 0.84
USH1CQ9Y6N9 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USH1CQ9Y6N9 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
USH1CQ9Y6N9 SERBP1P1-201ENST00000396021 1160 ntBASIC20.3■□□□□ 0.84
USH1CQ9Y6N9 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC20.3■□□□□ 0.84
USH1CQ9Y6N9 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
USH1CQ9Y6N9 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
USH1CQ9Y6N9 AL138724.1-201ENST00000606771 1088 ntBASIC20.3■□□□□ 0.84
USH1CQ9Y6N9 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC20.3■□□□□ 0.84
USH1CQ9Y6N9 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.3■□□□□ 0.84
USH1CQ9Y6N9 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
USH1CQ9Y6N9 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
USH1CQ9Y6N9 AP000974.1-201ENST00000623909 2387 ntBASIC20.3■□□□□ 0.84
USH1CQ9Y6N9 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USH1CQ9Y6N9 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USH1CQ9Y6N9 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
USH1CQ9Y6N9 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
USH1CQ9Y6N9 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
USH1CQ9Y6N9 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USH1CQ9Y6N9 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.29■□□□□ 0.84
USH1CQ9Y6N9 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
USH1CQ9Y6N9 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
USH1CQ9Y6N9 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USH1CQ9Y6N9 QDPR-206ENST00000508623 601 ntTSL 3 BASIC20.29■□□□□ 0.84
USH1CQ9Y6N9 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.29■□□□□ 0.84
USH1CQ9Y6N9 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
USH1CQ9Y6N9 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
USH1CQ9Y6N9 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USH1CQ9Y6N9 TNXA-203ENST00000507684 2038 ntBASIC20.29■□□□□ 0.84
USH1CQ9Y6N9 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.29■□□□□ 0.84
USH1CQ9Y6N9 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC20.29■□□□□ 0.84
USH1CQ9Y6N9 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC20.29■□□□□ 0.84
USH1CQ9Y6N9 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
USH1CQ9Y6N9 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
USH1CQ9Y6N9 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC20.28■□□□□ 0.84
USH1CQ9Y6N9 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
USH1CQ9Y6N9 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
USH1CQ9Y6N9 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
USH1CQ9Y6N9 SMUG1P1-201ENST00000590640 811 ntBASIC20.28■□□□□ 0.84
USH1CQ9Y6N9 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.28■□□□□ 0.84
USH1CQ9Y6N9 AL512631.2-201ENST00000604634 923 ntBASIC20.28■□□□□ 0.84
USH1CQ9Y6N9 AC136469.2-201ENST00000623944 1028 ntBASIC20.28■□□□□ 0.84
USH1CQ9Y6N9 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
USH1CQ9Y6N9 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.28■□□□□ 0.84
USH1CQ9Y6N9 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
USH1CQ9Y6N9 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.28■□□□□ 0.84
USH1CQ9Y6N9 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
USH1CQ9Y6N9 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
USH1CQ9Y6N9 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
USH1CQ9Y6N9 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms