Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VSX1Q9NZR4 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VSX1Q9NZR4 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
VSX1Q9NZR4 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.25■□□□□ 0.51
VSX1Q9NZR4 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
VSX1Q9NZR4 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC18.25■□□□□ 0.51
VSX1Q9NZR4 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.25■□□□□ 0.51
VSX1Q9NZR4 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
VSX1Q9NZR4 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VSX1Q9NZR4 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VSX1Q9NZR4 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VSX1Q9NZR4 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VSX1Q9NZR4 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VSX1Q9NZR4 AC091799.1-201ENST00000422823 811 ntBASIC18.25■□□□□ 0.51
VSX1Q9NZR4 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC18.25■□□□□ 0.51
VSX1Q9NZR4 GALNS-213ENST00000569433 723 ntTSL 3 BASIC18.25■□□□□ 0.51
VSX1Q9NZR4 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC18.25■□□□□ 0.51
VSX1Q9NZR4 KRT18P61-201ENST00000585825 1298 ntBASIC18.25■□□□□ 0.51
VSX1Q9NZR4 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC18.25■□□□□ 0.51
VSX1Q9NZR4 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC18.25■□□□□ 0.51
VSX1Q9NZR4 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
VSX1Q9NZR4 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VSX1Q9NZR4 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC18.25■□□□□ 0.51
VSX1Q9NZR4 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC18.25■□□□□ 0.51
VSX1Q9NZR4 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VSX1Q9NZR4 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VSX1Q9NZR4 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
VSX1Q9NZR4 AL162377.1-201ENST00000618844 1793 ntBASIC18.25■□□□□ 0.51
VSX1Q9NZR4 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VSX1Q9NZR4 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC18.24■□□□□ 0.51
VSX1Q9NZR4 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VSX1Q9NZR4 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC18.24■□□□□ 0.51
VSX1Q9NZR4 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VSX1Q9NZR4 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VSX1Q9NZR4 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
VSX1Q9NZR4 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC18.24■□□□□ 0.51
VSX1Q9NZR4 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC18.24■□□□□ 0.51
VSX1Q9NZR4 MIR2861-201ENST00000636310 90 ntBASIC18.24■□□□□ 0.51
VSX1Q9NZR4 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VSX1Q9NZR4 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
VSX1Q9NZR4 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VSX1Q9NZR4 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VSX1Q9NZR4 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
VSX1Q9NZR4 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VSX1Q9NZR4 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
VSX1Q9NZR4 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VSX1Q9NZR4 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VSX1Q9NZR4 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC18.23■□□□□ 0.51
VSX1Q9NZR4 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VSX1Q9NZR4 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VSX1Q9NZR4 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VSX1Q9NZR4 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
VSX1Q9NZR4 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VSX1Q9NZR4 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC18.23■□□□□ 0.51
VSX1Q9NZR4 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC18.23■□□□□ 0.51
VSX1Q9NZR4 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC18.23■□□□□ 0.51
VSX1Q9NZR4 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC18.23■□□□□ 0.51
VSX1Q9NZR4 TFG-210ENST00000620299 1289 ntTSL 5 BASIC18.23■□□□□ 0.51
VSX1Q9NZR4 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VSX1Q9NZR4 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VSX1Q9NZR4 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC18.23■□□□□ 0.51
VSX1Q9NZR4 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC18.23■□□□□ 0.51
VSX1Q9NZR4 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VSX1Q9NZR4 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VSX1Q9NZR4 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
VSX1Q9NZR4 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VSX1Q9NZR4 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VSX1Q9NZR4 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC18.22■□□□□ 0.51
VSX1Q9NZR4 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
VSX1Q9NZR4 AC092720.2-201ENST00000602388 1665 ntBASIC18.22■□□□□ 0.51
VSX1Q9NZR4 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC18.22■□□□□ 0.51
VSX1Q9NZR4 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VSX1Q9NZR4 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VSX1Q9NZR4 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC18.22■□□□□ 0.51
VSX1Q9NZR4 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC18.22■□□□□ 0.51
VSX1Q9NZR4 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VSX1Q9NZR4 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VSX1Q9NZR4 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VSX1Q9NZR4 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
VSX1Q9NZR4 CD44-222ENST00000526025 1052 ntTSL 2 BASIC18.22■□□□□ 0.51
VSX1Q9NZR4 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VSX1Q9NZR4 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VSX1Q9NZR4 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC18.22■□□□□ 0.51
VSX1Q9NZR4 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VSX1Q9NZR4 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VSX1Q9NZR4 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VSX1Q9NZR4 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC18.22■□□□□ 0.51
VSX1Q9NZR4 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VSX1Q9NZR4 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC18.22■□□□□ 0.51
VSX1Q9NZR4 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC18.22■□□□□ 0.51
VSX1Q9NZR4 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VSX1Q9NZR4 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
VSX1Q9NZR4 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VSX1Q9NZR4 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VSX1Q9NZR4 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
VSX1Q9NZR4 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
VSX1Q9NZR4 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VSX1Q9NZR4 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VSX1Q9NZR4 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC18.21■□□□□ 0.51
VSX1Q9NZR4 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms