Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
DDX56Q9NY93 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC21.31■■□□□ 1
DDX56Q9NY93 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
DDX56Q9NY93 AL512408.1-201ENST00000569378 2000 ntBASIC21.31■■□□□ 1
DDX56Q9NY93 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC21.31■■□□□ 1
DDX56Q9NY93 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.31■■□□□ 1
DDX56Q9NY93 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC21.31■■□□□ 1
DDX56Q9NY93 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC21.31■■□□□ 1
DDX56Q9NY93 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC21.31■■□□□ 1
DDX56Q9NY93 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC21.31■■□□□ 1
DDX56Q9NY93 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC21.31■■□□□ 1
DDX56Q9NY93 TFG-210ENST00000620299 1289 ntTSL 5 BASIC21.31■■□□□ 1
DDX56Q9NY93 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC21.31■■□□□ 1
DDX56Q9NY93 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
DDX56Q9NY93 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC21.31■■□□□ 1
DDX56Q9NY93 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC21.3■■□□□ 1
DDX56Q9NY93 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC21.3■■□□□ 1
DDX56Q9NY93 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
DDX56Q9NY93 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
DDX56Q9NY93 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
DDX56Q9NY93 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
DDX56Q9NY93 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
DDX56Q9NY93 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC21.3■■□□□ 1
DDX56Q9NY93 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
DDX56Q9NY93 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
DDX56Q9NY93 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC21.3■■□□□ 1
DDX56Q9NY93 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
DDX56Q9NY93 KRT18P61-201ENST00000585825 1298 ntBASIC21.3■■□□□ 1
DDX56Q9NY93 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
DDX56Q9NY93 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
DDX56Q9NY93 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC21.3■■□□□ 1
DDX56Q9NY93 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
DDX56Q9NY93 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
DDX56Q9NY93 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
DDX56Q9NY93 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.29■■□□□ 1
DDX56Q9NY93 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
DDX56Q9NY93 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC21.29■■□□□ 1
DDX56Q9NY93 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
DDX56Q9NY93 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
DDX56Q9NY93 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC21.29■■□□□ 1
DDX56Q9NY93 SAPCD2P1-201ENST00000395413 1184 ntBASIC21.29■■□□□ 1
DDX56Q9NY93 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
DDX56Q9NY93 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
DDX56Q9NY93 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC21.29■■□□□ 1
DDX56Q9NY93 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
DDX56Q9NY93 UBE2DNL-204ENST00000602536 740 ntBASIC21.29■■□□□ 1
DDX56Q9NY93 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
DDX56Q9NY93 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC21.29■■□□□ 1
DDX56Q9NY93 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC21.29■■□□□ 1
DDX56Q9NY93 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
DDX56Q9NY93 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
DDX56Q9NY93 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
DDX56Q9NY93 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
DDX56Q9NY93 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC21.28■■□□□ 1
DDX56Q9NY93 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC21.28■■□□□ 1
DDX56Q9NY93 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC21.28■■□□□ 1
DDX56Q9NY93 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC21.28■■□□□ 1
DDX56Q9NY93 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC21.28■■□□□ 1
DDX56Q9NY93 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
DDX56Q9NY93 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
DDX56Q9NY93 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC21.28■■□□□ 1
DDX56Q9NY93 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
DDX56Q9NY93 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC21.28■■□□□ 1
DDX56Q9NY93 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC21.28■■□□□ 1
DDX56Q9NY93 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC21.28■■□□□ 1
DDX56Q9NY93 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC21.28■■□□□ 1
DDX56Q9NY93 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
DDX56Q9NY93 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
DDX56Q9NY93 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
DDX56Q9NY93 ADM-207ENST00000530439 1839 ntTSL 2 BASIC21.27■■□□□ 1
DDX56Q9NY93 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
DDX56Q9NY93 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC21.27■■□□□ 1
DDX56Q9NY93 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
DDX56Q9NY93 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC21.27■■□□□ 1
DDX56Q9NY93 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
DDX56Q9NY93 AC034268.1-201ENST00000441047 882 ntBASIC21.27■■□□□ 1
DDX56Q9NY93 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC21.27■■□□□ 1
DDX56Q9NY93 CDV3P1-201ENST00000471403 739 ntBASIC21.27■■□□□ 1
DDX56Q9NY93 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC21.27■■□□□ 1
DDX56Q9NY93 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC21.27■■□□□ 1
DDX56Q9NY93 MYCNOS-205ENST00000641950 531 ntBASIC21.27■■□□□ 1
DDX56Q9NY93 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
DDX56Q9NY93 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC21.27■■□□□ 1
DDX56Q9NY93 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
DDX56Q9NY93 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
DDX56Q9NY93 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
DDX56Q9NY93 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
DDX56Q9NY93 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
DDX56Q9NY93 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
DDX56Q9NY93 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC21.26■□□□□ 0.99
DDX56Q9NY93 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
DDX56Q9NY93 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC21.26■□□□□ 0.99
DDX56Q9NY93 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
DDX56Q9NY93 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC21.26■□□□□ 0.99
DDX56Q9NY93 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC21.26■□□□□ 0.99
DDX56Q9NY93 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
DDX56Q9NY93 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
DDX56Q9NY93 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC21.26■□□□□ 0.99
DDX56Q9NY93 NTF6G-201ENST00000591094 616 ntBASIC21.26■□□□□ 0.99
DDX56Q9NY93 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms