Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL25A1Q9BXS0 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC21.08■□□□□ 0.97
COL25A1Q9BXS0 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL25A1Q9BXS0 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC21.08■□□□□ 0.97
COL25A1Q9BXS0 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC21.08■□□□□ 0.97
COL25A1Q9BXS0 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC21.08■□□□□ 0.97
COL25A1Q9BXS0 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC21.08■□□□□ 0.97
COL25A1Q9BXS0 AL138966.2-201ENST00000621997 464 ntBASIC21.08■□□□□ 0.97
COL25A1Q9BXS0 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC21.08■□□□□ 0.97
COL25A1Q9BXS0 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC21.08■□□□□ 0.96
COL25A1Q9BXS0 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC21.08■□□□□ 0.96
COL25A1Q9BXS0 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC21.07■□□□□ 0.96
COL25A1Q9BXS0 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
COL25A1Q9BXS0 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
COL25A1Q9BXS0 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL25A1Q9BXS0 F2R-202ENST00000505600 442 ntTSL 2 BASIC21.07■□□□□ 0.96
COL25A1Q9BXS0 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC21.07■□□□□ 0.96
COL25A1Q9BXS0 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC21.07■□□□□ 0.96
COL25A1Q9BXS0 CKBP1-201ENST00000565489 1086 ntBASIC21.07■□□□□ 0.96
COL25A1Q9BXS0 PRR29-207ENST00000580752 458 ntTSL 3 BASIC21.07■□□□□ 0.96
COL25A1Q9BXS0 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL25A1Q9BXS0 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL25A1Q9BXS0 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC21.07■□□□□ 0.96
COL25A1Q9BXS0 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC21.06■□□□□ 0.96
COL25A1Q9BXS0 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC21.06■□□□□ 0.96
COL25A1Q9BXS0 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL25A1Q9BXS0 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC21.06■□□□□ 0.96
COL25A1Q9BXS0 AC245052.3-201ENST00000450182 901 ntBASIC21.06■□□□□ 0.96
COL25A1Q9BXS0 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC21.06■□□□□ 0.96
COL25A1Q9BXS0 PTK2-216ENST00000519881 863 ntTSL 3 BASIC21.06■□□□□ 0.96
COL25A1Q9BXS0 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL25A1Q9BXS0 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC21.06■□□□□ 0.96
COL25A1Q9BXS0 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL25A1Q9BXS0 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL25A1Q9BXS0 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC21.06■□□□□ 0.96
COL25A1Q9BXS0 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL25A1Q9BXS0 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC21.05■□□□□ 0.96
COL25A1Q9BXS0 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
COL25A1Q9BXS0 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL25A1Q9BXS0 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL25A1Q9BXS0 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
COL25A1Q9BXS0 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
COL25A1Q9BXS0 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC21.05■□□□□ 0.96
COL25A1Q9BXS0 PRR31-201ENST00000371629 978 ntTSL 2 BASIC21.05■□□□□ 0.96
COL25A1Q9BXS0 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC21.05■□□□□ 0.96
COL25A1Q9BXS0 RPP21-221ENST00000428040 594 ntTSL 2 BASIC21.05■□□□□ 0.96
COL25A1Q9BXS0 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC21.05■□□□□ 0.96
COL25A1Q9BXS0 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL25A1Q9BXS0 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC21.05■□□□□ 0.96
COL25A1Q9BXS0 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC21.05■□□□□ 0.96
COL25A1Q9BXS0 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC21.05■□□□□ 0.96
COL25A1Q9BXS0 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC21.05■□□□□ 0.96
COL25A1Q9BXS0 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC21.05■□□□□ 0.96
COL25A1Q9BXS0 AC117500.6-201ENST00000624871 588 ntBASIC21.05■□□□□ 0.96
COL25A1Q9BXS0 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
COL25A1Q9BXS0 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL25A1Q9BXS0 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC21.04■□□□□ 0.96
COL25A1Q9BXS0 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COL25A1Q9BXS0 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC21.04■□□□□ 0.96
COL25A1Q9BXS0 COX11P1-201ENST00000489116 835 ntBASIC21.04■□□□□ 0.96
COL25A1Q9BXS0 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC21.04■□□□□ 0.96
COL25A1Q9BXS0 PRELID1P1-202ENST00000567272 903 ntBASIC21.04■□□□□ 0.96
COL25A1Q9BXS0 AL121829.2-201ENST00000620908 328 ntBASIC21.04■□□□□ 0.96
COL25A1Q9BXS0 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC21.04■□□□□ 0.96
COL25A1Q9BXS0 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL25A1Q9BXS0 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC21.04■□□□□ 0.96
COL25A1Q9BXS0 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL25A1Q9BXS0 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC21.04■□□□□ 0.96
COL25A1Q9BXS0 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL25A1Q9BXS0 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL25A1Q9BXS0 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL25A1Q9BXS0 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL25A1Q9BXS0 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
COL25A1Q9BXS0 ATP5G2P1-201ENST00000433580 426 ntBASIC21.03■□□□□ 0.96
COL25A1Q9BXS0 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
COL25A1Q9BXS0 CFL1-212ENST00000531413 636 ntTSL 3 BASIC21.03■□□□□ 0.96
COL25A1Q9BXS0 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC21.03■□□□□ 0.96
COL25A1Q9BXS0 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC21.03■□□□□ 0.96
COL25A1Q9BXS0 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC21.03■□□□□ 0.96
COL25A1Q9BXS0 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC21.03■□□□□ 0.96
COL25A1Q9BXS0 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC21.03■□□□□ 0.96
COL25A1Q9BXS0 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL25A1Q9BXS0 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
COL25A1Q9BXS0 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL25A1Q9BXS0 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.02■□□□□ 0.96
COL25A1Q9BXS0 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL25A1Q9BXS0 HMGA1P5-201ENST00000412453 271 ntBASIC21.02■□□□□ 0.96
COL25A1Q9BXS0 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC21.02■□□□□ 0.96
COL25A1Q9BXS0 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC21.02■□□□□ 0.96
COL25A1Q9BXS0 SKP2-204ENST00000508514 821 ntTSL 3 BASIC21.02■□□□□ 0.96
COL25A1Q9BXS0 UNC93B7-201ENST00000509439 705 ntBASIC21.02■□□□□ 0.96
COL25A1Q9BXS0 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC21.02■□□□□ 0.96
COL25A1Q9BXS0 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC21.02■□□□□ 0.96
COL25A1Q9BXS0 AL671883.3-201ENST00000603274 991 ntBASIC21.02■□□□□ 0.96
COL25A1Q9BXS0 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL25A1Q9BXS0 AC130371.2-201ENST00000619443 611 ntBASIC21.02■□□□□ 0.96
COL25A1Q9BXS0 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC21.01■□□□□ 0.95
COL25A1Q9BXS0 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL25A1Q9BXS0 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL25A1Q9BXS0 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms