Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VRK1Q99986 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VRK1Q99986 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VRK1Q99986 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VRK1Q99986 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
VRK1Q99986 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC17.98■□□□□ 0.47
VRK1Q99986 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VRK1Q99986 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VRK1Q99986 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
VRK1Q99986 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
VRK1Q99986 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VRK1Q99986 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VRK1Q99986 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VRK1Q99986 RNF146-206ENST00000480444 843 ntTSL 2 BASIC17.97■□□□□ 0.47
VRK1Q99986 AC083906.2-201ENST00000511578 360 ntBASIC17.97■□□□□ 0.47
VRK1Q99986 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC17.97■□□□□ 0.47
VRK1Q99986 AL121832.2-201ENST00000610979 668 ntBASIC17.97■□□□□ 0.47
VRK1Q99986 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VRK1Q99986 PARP1-210ENST00000629232 477 ntTSL 5 BASIC17.97■□□□□ 0.47
VRK1Q99986 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VRK1Q99986 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
VRK1Q99986 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
VRK1Q99986 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
VRK1Q99986 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
VRK1Q99986 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VRK1Q99986 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VRK1Q99986 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC17.96■□□□□ 0.47
VRK1Q99986 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VRK1Q99986 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VRK1Q99986 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
VRK1Q99986 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VRK1Q99986 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC17.96■□□□□ 0.47
VRK1Q99986 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC17.96■□□□□ 0.47
VRK1Q99986 DENND3-207ENST00000518347 850 ntTSL 2 BASIC17.96■□□□□ 0.47
VRK1Q99986 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC17.96■□□□□ 0.47
VRK1Q99986 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC17.96■□□□□ 0.47
VRK1Q99986 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VRK1Q99986 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VRK1Q99986 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VRK1Q99986 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC17.96■□□□□ 0.47
VRK1Q99986 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC17.96■□□□□ 0.47
VRK1Q99986 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
VRK1Q99986 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC17.96■□□□□ 0.46
VRK1Q99986 AF106564.1-201ENST00000607058 2553 ntBASIC17.95■□□□□ 0.46
VRK1Q99986 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC17.95■□□□□ 0.46
VRK1Q99986 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VRK1Q99986 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VRK1Q99986 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC17.95■□□□□ 0.46
VRK1Q99986 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VRK1Q99986 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC17.95■□□□□ 0.46
VRK1Q99986 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
VRK1Q99986 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VRK1Q99986 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
VRK1Q99986 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC17.95■□□□□ 0.46
VRK1Q99986 RARG-204ENST00000543726 1779 ntTSL 2 BASIC17.95■□□□□ 0.46
VRK1Q99986 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
VRK1Q99986 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
VRK1Q99986 POU5F1P4-201ENST00000413175 1085 ntBASIC17.95■□□□□ 0.46
VRK1Q99986 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC17.95■□□□□ 0.46
VRK1Q99986 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
VRK1Q99986 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VRK1Q99986 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
VRK1Q99986 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VRK1Q99986 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC17.95■□□□□ 0.46
VRK1Q99986 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
VRK1Q99986 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VRK1Q99986 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VRK1Q99986 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
VRK1Q99986 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VRK1Q99986 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
VRK1Q99986 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VRK1Q99986 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VRK1Q99986 AC003102.1-202ENST00000563394 1796 ntBASIC17.94■□□□□ 0.46
VRK1Q99986 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VRK1Q99986 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC17.94■□□□□ 0.46
VRK1Q99986 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
VRK1Q99986 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC17.94■□□□□ 0.46
VRK1Q99986 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VRK1Q99986 SLC29A4P1-201ENST00000398760 971 ntBASIC17.94■□□□□ 0.46
VRK1Q99986 TERF1P5-201ENST00000477545 1207 ntBASIC17.94■□□□□ 0.46
VRK1Q99986 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC17.94■□□□□ 0.46
VRK1Q99986 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VRK1Q99986 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC17.94■□□□□ 0.46
VRK1Q99986 AL050303.2-201ENST00000619798 666 ntBASIC17.94■□□□□ 0.46
VRK1Q99986 AC013268.1-206ENST00000638368 961 ntBASIC17.94■□□□□ 0.46
VRK1Q99986 AC112229.1-201ENST00000639295 961 ntBASIC17.94■□□□□ 0.46
VRK1Q99986 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC17.94■□□□□ 0.46
VRK1Q99986 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VRK1Q99986 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
VRK1Q99986 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VRK1Q99986 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VRK1Q99986 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VRK1Q99986 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VRK1Q99986 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
VRK1Q99986 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VRK1Q99986 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VRK1Q99986 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
VRK1Q99986 LINC01006-201ENST00000333319 2292 ntBASIC17.93■□□□□ 0.46
VRK1Q99986 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VRK1Q99986 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms