Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL12A1Q99715 AC079089.2-201ENST00000531211 1277 ntBASIC18.07■□□□□ 0.48
COL12A1Q99715 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
COL12A1Q99715 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL12A1Q99715 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL12A1Q99715 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL12A1Q99715 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL12A1Q99715 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC18.07■□□□□ 0.48
COL12A1Q99715 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
COL12A1Q99715 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL12A1Q99715 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
COL12A1Q99715 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC18.06■□□□□ 0.48
COL12A1Q99715 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL12A1Q99715 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL12A1Q99715 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC18.06■□□□□ 0.48
COL12A1Q99715 HCG4P8-203ENST00000443049 980 ntBASIC18.06■□□□□ 0.48
COL12A1Q99715 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC18.06■□□□□ 0.48
COL12A1Q99715 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL12A1Q99715 NFE2L3P1-201ENST00000588207 1959 ntBASIC18.06■□□□□ 0.48
COL12A1Q99715 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
COL12A1Q99715 AL031133.1-201ENST00000406807 723 ntBASIC18.06■□□□□ 0.48
COL12A1Q99715 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL12A1Q99715 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
COL12A1Q99715 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL12A1Q99715 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC18.05■□□□□ 0.48
COL12A1Q99715 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL12A1Q99715 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL12A1Q99715 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
COL12A1Q99715 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC18.05■□□□□ 0.48
COL12A1Q99715 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL12A1Q99715 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL12A1Q99715 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL12A1Q99715 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC18.05■□□□□ 0.48
COL12A1Q99715 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
COL12A1Q99715 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
COL12A1Q99715 IPPK-202ENST00000375522 882 ntTSL 3 BASIC18.04■□□□□ 0.48
COL12A1Q99715 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC18.04■□□□□ 0.48
COL12A1Q99715 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.04■□□□□ 0.48
COL12A1Q99715 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
COL12A1Q99715 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL12A1Q99715 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC18.04■□□□□ 0.48
COL12A1Q99715 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL12A1Q99715 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC18.04■□□□□ 0.48
COL12A1Q99715 AK4P3-201ENST00000418260 669 ntBASIC18.04■□□□□ 0.48
COL12A1Q99715 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC18.04■□□□□ 0.48
COL12A1Q99715 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
COL12A1Q99715 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL12A1Q99715 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
COL12A1Q99715 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC18.04■□□□□ 0.48
COL12A1Q99715 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL12A1Q99715 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
COL12A1Q99715 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL12A1Q99715 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL12A1Q99715 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.04■□□□□ 0.48
COL12A1Q99715 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.04■□□□□ 0.48
COL12A1Q99715 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
COL12A1Q99715 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL12A1Q99715 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL12A1Q99715 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC18.04■□□□□ 0.48
COL12A1Q99715 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL12A1Q99715 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC18.03■□□□□ 0.48
COL12A1Q99715 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
COL12A1Q99715 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL12A1Q99715 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL12A1Q99715 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL12A1Q99715 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL12A1Q99715 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
COL12A1Q99715 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL12A1Q99715 PP7080-204ENST00000510714 601 ntTSL 3 BASIC18.03■□□□□ 0.48
COL12A1Q99715 PREB-202ENST00000406567 1910 ntTSL 5 BASIC18.03■□□□□ 0.48
COL12A1Q99715 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC18.03■□□□□ 0.48
COL12A1Q99715 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL12A1Q99715 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC18.03■□□□□ 0.48
COL12A1Q99715 COMT-203ENST00000403184 2217 ntTSL 2 BASIC18.03■□□□□ 0.48
COL12A1Q99715 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL12A1Q99715 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL12A1Q99715 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
COL12A1Q99715 MOK-233ENST00000524214 1539 ntTSL 2 BASIC18.03■□□□□ 0.48
COL12A1Q99715 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC18.03■□□□□ 0.48
COL12A1Q99715 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.03■□□□□ 0.48
COL12A1Q99715 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC18.03■□□□□ 0.48
COL12A1Q99715 DBP-204ENST00000599385 709 ntTSL 3 BASIC18.03■□□□□ 0.48
COL12A1Q99715 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC18.03■□□□□ 0.48
COL12A1Q99715 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL12A1Q99715 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL12A1Q99715 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL12A1Q99715 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL12A1Q99715 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL12A1Q99715 AC022616.7-201ENST00000525383 220 ntBASIC18.02■□□□□ 0.48
COL12A1Q99715 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
COL12A1Q99715 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC18.02■□□□□ 0.48
COL12A1Q99715 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL12A1Q99715 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC18.02■□□□□ 0.48
COL12A1Q99715 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL12A1Q99715 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL12A1Q99715 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC18.02■□□□□ 0.48
COL12A1Q99715 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL12A1Q99715 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC18.02■□□□□ 0.48
COL12A1Q99715 AC063952.2-201ENST00000498792 1227 ntBASIC18.02■□□□□ 0.48
COL12A1Q99715 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC18.02■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms