Protein–RNA interactions for Protein: Q96PY6

NEK1, Serine/threonine-protein kinase Nek1, humanhuman

Predictions only

Length 1,258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1Q96PY6 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC24.25■■□□□ 1.47
NEK1Q96PY6 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC24.25■■□□□ 1.47
NEK1Q96PY6 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC24.25■■□□□ 1.47
NEK1Q96PY6 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
NEK1Q96PY6 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC24.24■■□□□ 1.47
NEK1Q96PY6 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
NEK1Q96PY6 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
NEK1Q96PY6 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
NEK1Q96PY6 CASP6-205ENST00000505486 538 ntTSL 4 BASIC24.24■■□□□ 1.47
NEK1Q96PY6 AL162412.1-201ENST00000567129 965 ntBASIC24.24■■□□□ 1.47
NEK1Q96PY6 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC24.24■■□□□ 1.47
NEK1Q96PY6 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC24.24■■□□□ 1.47
NEK1Q96PY6 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC24.24■■□□□ 1.47
NEK1Q96PY6 IKBKGP1-201ENST00000612193 1073 ntBASIC24.24■■□□□ 1.47
NEK1Q96PY6 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC24.24■■□□□ 1.47
NEK1Q96PY6 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC24.24■■□□□ 1.47
NEK1Q96PY6 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
NEK1Q96PY6 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
NEK1Q96PY6 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
NEK1Q96PY6 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
NEK1Q96PY6 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC24.23■■□□□ 1.47
NEK1Q96PY6 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC24.23■■□□□ 1.47
NEK1Q96PY6 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
NEK1Q96PY6 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
NEK1Q96PY6 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC24.23■■□□□ 1.47
NEK1Q96PY6 AC068338.2-201ENST00000563278 1430 ntBASIC24.23■■□□□ 1.47
NEK1Q96PY6 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
NEK1Q96PY6 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
NEK1Q96PY6 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
NEK1Q96PY6 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
NEK1Q96PY6 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC24.23■■□□□ 1.47
NEK1Q96PY6 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
NEK1Q96PY6 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
NEK1Q96PY6 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
NEK1Q96PY6 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC24.22■■□□□ 1.47
NEK1Q96PY6 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC24.22■■□□□ 1.47
NEK1Q96PY6 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC24.22■■□□□ 1.47
NEK1Q96PY6 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC24.22■■□□□ 1.47
NEK1Q96PY6 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
NEK1Q96PY6 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC24.22■■□□□ 1.47
NEK1Q96PY6 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC24.22■■□□□ 1.47
NEK1Q96PY6 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC24.22■■□□□ 1.47
NEK1Q96PY6 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC24.22■■□□□ 1.47
NEK1Q96PY6 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
NEK1Q96PY6 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC24.22■■□□□ 1.47
NEK1Q96PY6 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC24.22■■□□□ 1.47
NEK1Q96PY6 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC24.22■■□□□ 1.47
NEK1Q96PY6 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC24.22■■□□□ 1.47
NEK1Q96PY6 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC24.22■■□□□ 1.47
NEK1Q96PY6 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
NEK1Q96PY6 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
NEK1Q96PY6 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC24.21■■□□□ 1.47
NEK1Q96PY6 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC24.21■■□□□ 1.47
NEK1Q96PY6 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
NEK1Q96PY6 PBX1-209ENST00000485769 834 ntTSL 2 BASIC24.21■■□□□ 1.47
NEK1Q96PY6 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC24.21■■□□□ 1.47
NEK1Q96PY6 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC24.21■■□□□ 1.47
NEK1Q96PY6 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
NEK1Q96PY6 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
NEK1Q96PY6 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
NEK1Q96PY6 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC24.21■■□□□ 1.47
NEK1Q96PY6 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
NEK1Q96PY6 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC24.21■■□□□ 1.47
NEK1Q96PY6 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
NEK1Q96PY6 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC24.2■■□□□ 1.47
NEK1Q96PY6 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC24.2■■□□□ 1.47
NEK1Q96PY6 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC24.2■■□□□ 1.46
NEK1Q96PY6 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
NEK1Q96PY6 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
NEK1Q96PY6 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
NEK1Q96PY6 DET1-207ENST00000564406 2315 ntTSL 2 BASIC24.2■■□□□ 1.46
NEK1Q96PY6 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
NEK1Q96PY6 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
NEK1Q96PY6 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC24.2■■□□□ 1.46
NEK1Q96PY6 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC24.2■■□□□ 1.46
NEK1Q96PY6 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC24.2■■□□□ 1.46
NEK1Q96PY6 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC24.2■■□□□ 1.46
NEK1Q96PY6 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC24.2■■□□□ 1.46
NEK1Q96PY6 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC24.19■■□□□ 1.46
NEK1Q96PY6 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
NEK1Q96PY6 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC24.19■■□□□ 1.46
NEK1Q96PY6 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC24.19■■□□□ 1.46
NEK1Q96PY6 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC24.19■■□□□ 1.46
NEK1Q96PY6 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC24.19■■□□□ 1.46
NEK1Q96PY6 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
NEK1Q96PY6 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC24.19■■□□□ 1.46
NEK1Q96PY6 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
NEK1Q96PY6 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
NEK1Q96PY6 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC24.19■■□□□ 1.46
NEK1Q96PY6 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC24.19■■□□□ 1.46
NEK1Q96PY6 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC24.19■■□□□ 1.46
NEK1Q96PY6 AC231657.2-201ENST00000624556 255 ntBASIC24.19■■□□□ 1.46
NEK1Q96PY6 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC24.19■■□□□ 1.46
NEK1Q96PY6 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC24.19■■□□□ 1.46
NEK1Q96PY6 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC24.19■■□□□ 1.46
NEK1Q96PY6 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
NEK1Q96PY6 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
NEK1Q96PY6 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC24.19■■□□□ 1.46
NEK1Q96PY6 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
NEK1Q96PY6 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC24.18■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms