Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
CFAP54Q96N23 RPS15-203ENST00000586096 570 ntTSL 2 BASIC20.24■□□□□ 0.83
CFAP54Q96N23 DBP-204ENST00000599385 709 ntTSL 3 BASIC20.24■□□□□ 0.83
CFAP54Q96N23 AC120498.8-201ENST00000614275 531 ntBASIC20.24■□□□□ 0.83
CFAP54Q96N23 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CFAP54Q96N23 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
CFAP54Q96N23 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CFAP54Q96N23 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CFAP54Q96N23 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.23■□□□□ 0.83
CFAP54Q96N23 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CFAP54Q96N23 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CFAP54Q96N23 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.23■□□□□ 0.83
CFAP54Q96N23 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CFAP54Q96N23 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC20.23■□□□□ 0.83
CFAP54Q96N23 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CFAP54Q96N23 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.23■□□□□ 0.83
CFAP54Q96N23 MIR1238-201ENST00000408483 83 ntBASIC20.23■□□□□ 0.83
CFAP54Q96N23 FAM197Y1-201ENST00000421178 764 ntBASIC20.23■□□□□ 0.83
CFAP54Q96N23 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC20.23■□□□□ 0.83
CFAP54Q96N23 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC20.23■□□□□ 0.83
CFAP54Q96N23 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CFAP54Q96N23 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CFAP54Q96N23 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CFAP54Q96N23 AC246785.2-201ENST00000432512 513 ntBASIC20.23■□□□□ 0.83
CFAP54Q96N23 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
CFAP54Q96N23 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC20.23■□□□□ 0.83
CFAP54Q96N23 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC20.23■□□□□ 0.83
CFAP54Q96N23 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC20.23■□□□□ 0.83
CFAP54Q96N23 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CFAP54Q96N23 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC20.22■□□□□ 0.83
CFAP54Q96N23 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CFAP54Q96N23 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20.22■□□□□ 0.83
CFAP54Q96N23 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC20.22■□□□□ 0.83
CFAP54Q96N23 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.22■□□□□ 0.83
CFAP54Q96N23 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CFAP54Q96N23 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
CFAP54Q96N23 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC20.22■□□□□ 0.83
CFAP54Q96N23 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC20.22■□□□□ 0.83
CFAP54Q96N23 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CFAP54Q96N23 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.22■□□□□ 0.83
CFAP54Q96N23 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CFAP54Q96N23 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CFAP54Q96N23 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CFAP54Q96N23 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CFAP54Q96N23 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC20.21■□□□□ 0.83
CFAP54Q96N23 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CFAP54Q96N23 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CFAP54Q96N23 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
CFAP54Q96N23 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CFAP54Q96N23 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
CFAP54Q96N23 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CFAP54Q96N23 MCRIP2P1-201ENST00000394346 511 ntBASIC20.21■□□□□ 0.83
CFAP54Q96N23 AC063952.2-201ENST00000498792 1227 ntBASIC20.21■□□□□ 0.83
CFAP54Q96N23 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CFAP54Q96N23 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
CFAP54Q96N23 CLEC4GP1-201ENST00000596555 870 ntBASIC20.21■□□□□ 0.83
CFAP54Q96N23 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CFAP54Q96N23 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
CFAP54Q96N23 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CFAP54Q96N23 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CFAP54Q96N23 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CFAP54Q96N23 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC20.21■□□□□ 0.83
CFAP54Q96N23 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CFAP54Q96N23 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC20.21■□□□□ 0.83
CFAP54Q96N23 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.83
CFAP54Q96N23 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CFAP54Q96N23 AC093323.1-202ENST00000635031 2045 ntBASIC20.2■□□□□ 0.82
CFAP54Q96N23 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.2■□□□□ 0.82
CFAP54Q96N23 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CFAP54Q96N23 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC20.2■□□□□ 0.82
CFAP54Q96N23 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CFAP54Q96N23 AK4P3-201ENST00000418260 669 ntBASIC20.2■□□□□ 0.82
CFAP54Q96N23 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC20.2■□□□□ 0.82
CFAP54Q96N23 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CFAP54Q96N23 NDUFV2-AS1-203ENST00000608008 779 ntBASIC20.2■□□□□ 0.82
CFAP54Q96N23 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CFAP54Q96N23 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CFAP54Q96N23 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
CFAP54Q96N23 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.2■□□□□ 0.82
CFAP54Q96N23 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC20.2■□□□□ 0.82
CFAP54Q96N23 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
CFAP54Q96N23 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CFAP54Q96N23 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
CFAP54Q96N23 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC20.19■□□□□ 0.82
CFAP54Q96N23 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC20.19■□□□□ 0.82
CFAP54Q96N23 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.19■□□□□ 0.82
CFAP54Q96N23 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
CFAP54Q96N23 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CFAP54Q96N23 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CFAP54Q96N23 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC20.19■□□□□ 0.82
CFAP54Q96N23 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
CFAP54Q96N23 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC20.19■□□□□ 0.82
CFAP54Q96N23 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
CFAP54Q96N23 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CFAP54Q96N23 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CFAP54Q96N23 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
CFAP54Q96N23 AC137767.1-201ENST00000602918 1920 ntBASIC20.18■□□□□ 0.82
CFAP54Q96N23 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CFAP54Q96N23 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.18■□□□□ 0.82
CFAP54Q96N23 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms