Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC21.2■□□□□ 0.98
ATG4AQ8WYN0 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
ATG4AQ8WYN0 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC21.2■□□□□ 0.98
ATG4AQ8WYN0 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
ATG4AQ8WYN0 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
ATG4AQ8WYN0 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC21.19■□□□□ 0.98
ATG4AQ8WYN0 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
ATG4AQ8WYN0 BID-204ENST00000399767 2129 ntTSL 2 BASIC21.19■□□□□ 0.98
ATG4AQ8WYN0 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
ATG4AQ8WYN0 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC21.19■□□□□ 0.98
ATG4AQ8WYN0 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC21.19■□□□□ 0.98
ATG4AQ8WYN0 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
ATG4AQ8WYN0 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
ATG4AQ8WYN0 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
ATG4AQ8WYN0 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
ATG4AQ8WYN0 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
ATG4AQ8WYN0 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
ATG4AQ8WYN0 DUX4L2-201ENST00000561772 1275 ntBASIC21.19■□□□□ 0.98
ATG4AQ8WYN0 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC21.19■□□□□ 0.98
ATG4AQ8WYN0 AP001160.3-201ENST00000601484 763 ntBASIC21.19■□□□□ 0.98
ATG4AQ8WYN0 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC21.19■□□□□ 0.98
ATG4AQ8WYN0 DUX4L6-201ENST00000626483 1275 ntBASIC21.19■□□□□ 0.98
ATG4AQ8WYN0 DUX4L1-201ENST00000627662 1275 ntBASIC21.19■□□□□ 0.98
ATG4AQ8WYN0 DUX4L8-201ENST00000629013 1275 ntBASIC21.19■□□□□ 0.98
ATG4AQ8WYN0 DUX4L3-201ENST00000630187 1275 ntBASIC21.19■□□□□ 0.98
ATG4AQ8WYN0 DUX4L7-201ENST00000630678 1275 ntBASIC21.19■□□□□ 0.98
ATG4AQ8WYN0 DUX4L5-201ENST00000630834 1275 ntBASIC21.19■□□□□ 0.98
ATG4AQ8WYN0 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC21.19■□□□□ 0.98
ATG4AQ8WYN0 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC21.19■□□□□ 0.98
ATG4AQ8WYN0 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
ATG4AQ8WYN0 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
ATG4AQ8WYN0 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
ATG4AQ8WYN0 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
ATG4AQ8WYN0 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
ATG4AQ8WYN0 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
ATG4AQ8WYN0 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC21.18■□□□□ 0.98
ATG4AQ8WYN0 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
ATG4AQ8WYN0 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
ATG4AQ8WYN0 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
ATG4AQ8WYN0 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
ATG4AQ8WYN0 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
ATG4AQ8WYN0 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
ATG4AQ8WYN0 JTB-203ENST00000368589 1216 ntTSL 2 BASIC21.18■□□□□ 0.98
ATG4AQ8WYN0 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC21.18■□□□□ 0.98
ATG4AQ8WYN0 MIR638-201ENST00000385237 100 ntBASIC21.18■□□□□ 0.98
ATG4AQ8WYN0 AC120498.10-201ENST00000621827 505 ntBASIC21.18■□□□□ 0.98
ATG4AQ8WYN0 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
ATG4AQ8WYN0 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
ATG4AQ8WYN0 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
ATG4AQ8WYN0 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ATG4AQ8WYN0 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
ATG4AQ8WYN0 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC21.17■□□□□ 0.98
ATG4AQ8WYN0 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
ATG4AQ8WYN0 PTPA-214ENST00000423100 988 ntTSL 2 BASIC21.17■□□□□ 0.98
ATG4AQ8WYN0 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
ATG4AQ8WYN0 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC21.17■□□□□ 0.98
ATG4AQ8WYN0 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
ATG4AQ8WYN0 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
ATG4AQ8WYN0 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
ATG4AQ8WYN0 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
ATG4AQ8WYN0 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ATG4AQ8WYN0 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ATG4AQ8WYN0 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC21.17■□□□□ 0.98
ATG4AQ8WYN0 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
ATG4AQ8WYN0 SMG8-203ENST00000578922 2178 ntBASIC21.16■□□□□ 0.98
ATG4AQ8WYN0 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
ATG4AQ8WYN0 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC21.16■□□□□ 0.98
ATG4AQ8WYN0 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ATG4AQ8WYN0 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
ATG4AQ8WYN0 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC21.16■□□□□ 0.98
ATG4AQ8WYN0 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC21.16■□□□□ 0.98
ATG4AQ8WYN0 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC21.16■□□□□ 0.98
ATG4AQ8WYN0 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC21.16■□□□□ 0.98
ATG4AQ8WYN0 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ATG4AQ8WYN0 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC21.16■□□□□ 0.98
ATG4AQ8WYN0 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC21.16■□□□□ 0.98
ATG4AQ8WYN0 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
ATG4AQ8WYN0 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ATG4AQ8WYN0 AC116050.2-201ENST00000612102 1779 ntBASIC21.15■□□□□ 0.98
ATG4AQ8WYN0 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
ATG4AQ8WYN0 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC21.15■□□□□ 0.98
ATG4AQ8WYN0 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
ATG4AQ8WYN0 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
ATG4AQ8WYN0 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC21.15■□□□□ 0.98
ATG4AQ8WYN0 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
ATG4AQ8WYN0 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ATG4AQ8WYN0 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ATG4AQ8WYN0 AK1-201ENST00000223836 736 ntTSL 3 BASIC21.15■□□□□ 0.98
ATG4AQ8WYN0 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
ATG4AQ8WYN0 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC21.15■□□□□ 0.98
ATG4AQ8WYN0 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC21.15■□□□□ 0.98
ATG4AQ8WYN0 TERF1P2-201ENST00000583350 1212 ntBASIC21.15■□□□□ 0.98
ATG4AQ8WYN0 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC21.15■□□□□ 0.98
ATG4AQ8WYN0 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
ATG4AQ8WYN0 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ATG4AQ8WYN0 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
ATG4AQ8WYN0 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
ATG4AQ8WYN0 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
ATG4AQ8WYN0 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
ATG4AQ8WYN0 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms