Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 INO80E-214ENST00000620599 515 ntTSL 2 BASIC18.98■□□□□ 0.63
BEST3Q8N1M1 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
BEST3Q8N1M1 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
BEST3Q8N1M1 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
BEST3Q8N1M1 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
BEST3Q8N1M1 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
BEST3Q8N1M1 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
BEST3Q8N1M1 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
BEST3Q8N1M1 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
BEST3Q8N1M1 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
BEST3Q8N1M1 CYP21A1P-202ENST00000354927 1481 ntBASIC18.97■□□□□ 0.63
BEST3Q8N1M1 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC18.97■□□□□ 0.63
BEST3Q8N1M1 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
BEST3Q8N1M1 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC18.97■□□□□ 0.63
BEST3Q8N1M1 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC18.97■□□□□ 0.63
BEST3Q8N1M1 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
BEST3Q8N1M1 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
BEST3Q8N1M1 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
BEST3Q8N1M1 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
BEST3Q8N1M1 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
BEST3Q8N1M1 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC18.97■□□□□ 0.63
BEST3Q8N1M1 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
BEST3Q8N1M1 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC18.97■□□□□ 0.63
BEST3Q8N1M1 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
BEST3Q8N1M1 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
BEST3Q8N1M1 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
BEST3Q8N1M1 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC18.97■□□□□ 0.63
BEST3Q8N1M1 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
BEST3Q8N1M1 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
BEST3Q8N1M1 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
BEST3Q8N1M1 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
BEST3Q8N1M1 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
BEST3Q8N1M1 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
BEST3Q8N1M1 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
BEST3Q8N1M1 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC18.97■□□□□ 0.63
BEST3Q8N1M1 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
BEST3Q8N1M1 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
BEST3Q8N1M1 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
BEST3Q8N1M1 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
BEST3Q8N1M1 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
BEST3Q8N1M1 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
BEST3Q8N1M1 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
BEST3Q8N1M1 TUB-203ENST00000534099 1759 ntTSL 2 BASIC18.96■□□□□ 0.63
BEST3Q8N1M1 GCK-205ENST00000437084 1385 ntTSL 5 BASIC18.96■□□□□ 0.63
BEST3Q8N1M1 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
BEST3Q8N1M1 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
BEST3Q8N1M1 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC18.96■□□□□ 0.63
BEST3Q8N1M1 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
BEST3Q8N1M1 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
BEST3Q8N1M1 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
BEST3Q8N1M1 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
BEST3Q8N1M1 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
BEST3Q8N1M1 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC18.96■□□□□ 0.63
BEST3Q8N1M1 NME6-213ENST00000451657 871 ntTSL 2 BASIC18.96■□□□□ 0.63
BEST3Q8N1M1 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC18.96■□□□□ 0.63
BEST3Q8N1M1 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
BEST3Q8N1M1 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
BEST3Q8N1M1 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC18.96■□□□□ 0.63
BEST3Q8N1M1 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
BEST3Q8N1M1 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
BEST3Q8N1M1 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC18.96■□□□□ 0.63
BEST3Q8N1M1 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
BEST3Q8N1M1 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC18.96■□□□□ 0.63
BEST3Q8N1M1 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC18.96■□□□□ 0.63
BEST3Q8N1M1 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
BEST3Q8N1M1 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC18.95■□□□□ 0.62
BEST3Q8N1M1 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
BEST3Q8N1M1 DYM-203ENST00000442713 2147 ntTSL 2 BASIC18.95■□□□□ 0.62
BEST3Q8N1M1 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
BEST3Q8N1M1 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
BEST3Q8N1M1 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
BEST3Q8N1M1 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
BEST3Q8N1M1 GAS7-202ENST00000396115 929 ntTSL 5 BASIC18.95■□□□□ 0.62
BEST3Q8N1M1 KRT18P29-201ENST00000397031 1267 ntBASIC18.95■□□□□ 0.62
BEST3Q8N1M1 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
BEST3Q8N1M1 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC18.95■□□□□ 0.62
BEST3Q8N1M1 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC18.95■□□□□ 0.62
BEST3Q8N1M1 GATS-209ENST00000454084 1030 ntTSL 3 BASIC18.95■□□□□ 0.62
BEST3Q8N1M1 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC18.95■□□□□ 0.62
BEST3Q8N1M1 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
BEST3Q8N1M1 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
BEST3Q8N1M1 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC18.95■□□□□ 0.62
BEST3Q8N1M1 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
BEST3Q8N1M1 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC18.95■□□□□ 0.62
BEST3Q8N1M1 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
BEST3Q8N1M1 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC18.95■□□□□ 0.62
BEST3Q8N1M1 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
BEST3Q8N1M1 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
BEST3Q8N1M1 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
BEST3Q8N1M1 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
BEST3Q8N1M1 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
BEST3Q8N1M1 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
BEST3Q8N1M1 PALM-207ENST00000590161 2137 ntTSL 4 BASIC18.94■□□□□ 0.62
BEST3Q8N1M1 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
BEST3Q8N1M1 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC18.94■□□□□ 0.62
BEST3Q8N1M1 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
BEST3Q8N1M1 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
BEST3Q8N1M1 ESRRAP1-201ENST00000400596 1257 ntBASIC18.94■□□□□ 0.62
BEST3Q8N1M1 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.94■□□□□ 0.62
BEST3Q8N1M1 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 157 ms