Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
VPS13CQ709C8 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
VPS13CQ709C8 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS13CQ709C8 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VPS13CQ709C8 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
VPS13CQ709C8 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VPS13CQ709C8 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS13CQ709C8 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS13CQ709C8 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VPS13CQ709C8 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC17.21■□□□□ 0.35
VPS13CQ709C8 REXO1L10P-201ENST00000615707 1290 ntBASIC17.21■□□□□ 0.35
VPS13CQ709C8 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS13CQ709C8 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS13CQ709C8 KRT8P9-201ENST00000558927 1449 ntBASIC17.21■□□□□ 0.35
VPS13CQ709C8 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS13CQ709C8 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
VPS13CQ709C8 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.34
VPS13CQ709C8 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS13CQ709C8 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
VPS13CQ709C8 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS13CQ709C8 CABP2-204ENST00000636477 941 ntTSL 5 BASIC17.2■□□□□ 0.34
VPS13CQ709C8 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS13CQ709C8 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VPS13CQ709C8 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS13CQ709C8 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
VPS13CQ709C8 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
VPS13CQ709C8 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS13CQ709C8 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC17.2■□□□□ 0.34
VPS13CQ709C8 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC17.2■□□□□ 0.34
VPS13CQ709C8 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC17.2■□□□□ 0.34
VPS13CQ709C8 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC17.2■□□□□ 0.34
VPS13CQ709C8 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS13CQ709C8 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC17.2■□□□□ 0.34
VPS13CQ709C8 AL049597.2-201ENST00000565575 961 ntBASIC17.2■□□□□ 0.34
VPS13CQ709C8 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VPS13CQ709C8 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
VPS13CQ709C8 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS13CQ709C8 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC17.2■□□□□ 0.34
VPS13CQ709C8 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS13CQ709C8 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC17.2■□□□□ 0.34
VPS13CQ709C8 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VPS13CQ709C8 TERF1P1-201ENST00000311003 1181 ntBASIC17.19■□□□□ 0.34
VPS13CQ709C8 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VPS13CQ709C8 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS13CQ709C8 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS13CQ709C8 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC17.19■□□□□ 0.34
VPS13CQ709C8 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
VPS13CQ709C8 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS13CQ709C8 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
VPS13CQ709C8 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VPS13CQ709C8 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC17.19■□□□□ 0.34
VPS13CQ709C8 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC17.19■□□□□ 0.34
VPS13CQ709C8 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS13CQ709C8 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VPS13CQ709C8 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC17.19■□□□□ 0.34
VPS13CQ709C8 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC17.19■□□□□ 0.34
VPS13CQ709C8 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC17.19■□□□□ 0.34
VPS13CQ709C8 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
VPS13CQ709C8 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
VPS13CQ709C8 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
VPS13CQ709C8 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS13CQ709C8 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VPS13CQ709C8 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS13CQ709C8 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC17.18■□□□□ 0.34
VPS13CQ709C8 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS13CQ709C8 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VPS13CQ709C8 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS13CQ709C8 AC007322.3-201ENST00000426526 701 ntBASIC17.18■□□□□ 0.34
VPS13CQ709C8 KRT18P57-201ENST00000443599 1254 ntBASIC17.18■□□□□ 0.34
VPS13CQ709C8 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VPS13CQ709C8 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VPS13CQ709C8 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC17.18■□□□□ 0.34
VPS13CQ709C8 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC17.18■□□□□ 0.34
VPS13CQ709C8 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS13CQ709C8 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS13CQ709C8 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS13CQ709C8 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VPS13CQ709C8 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS13CQ709C8 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS13CQ709C8 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
VPS13CQ709C8 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC17.18■□□□□ 0.34
VPS13CQ709C8 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VPS13CQ709C8 KRT18P68-201ENST00000392293 1000 ntBASIC17.17■□□□□ 0.34
VPS13CQ709C8 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
VPS13CQ709C8 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
VPS13CQ709C8 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VPS13CQ709C8 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
VPS13CQ709C8 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS13CQ709C8 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VPS13CQ709C8 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS13CQ709C8 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS13CQ709C8 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
VPS13CQ709C8 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS13CQ709C8 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS13CQ709C8 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VPS13CQ709C8 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS13CQ709C8 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
VPS13CQ709C8 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
VPS13CQ709C8 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC17.17■□□□□ 0.34
VPS13CQ709C8 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms