Protein–RNA interactions for Protein: Q6VVB1

NHLRC1, E3 ubiquitin-protein ligase NHLRC1, humanhuman

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NHLRC1Q6VVB1 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NHLRC1Q6VVB1 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
NHLRC1Q6VVB1 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
NHLRC1Q6VVB1 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
NHLRC1Q6VVB1 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
NHLRC1Q6VVB1 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
NHLRC1Q6VVB1 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
NHLRC1Q6VVB1 MIR935-201ENST00000401179 91 ntBASIC18.36■□□□□ 0.53
NHLRC1Q6VVB1 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC18.36■□□□□ 0.53
NHLRC1Q6VVB1 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC18.36■□□□□ 0.53
NHLRC1Q6VVB1 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC18.36■□□□□ 0.53
NHLRC1Q6VVB1 DUX4L16-201ENST00000555130 1264 ntBASIC18.36■□□□□ 0.53
NHLRC1Q6VVB1 AC007225.1-201ENST00000566331 1836 ntBASIC18.36■□□□□ 0.53
NHLRC1Q6VVB1 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC18.36■□□□□ 0.53
NHLRC1Q6VVB1 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC18.36■□□□□ 0.53
NHLRC1Q6VVB1 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
NHLRC1Q6VVB1 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
NHLRC1Q6VVB1 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
NHLRC1Q6VVB1 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
NHLRC1Q6VVB1 ME2-216ENST00000639850 2331 ntTSL 5 BASIC18.35■□□□□ 0.53
NHLRC1Q6VVB1 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
NHLRC1Q6VVB1 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
NHLRC1Q6VVB1 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
NHLRC1Q6VVB1 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NHLRC1Q6VVB1 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
NHLRC1Q6VVB1 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
NHLRC1Q6VVB1 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC18.35■□□□□ 0.53
NHLRC1Q6VVB1 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
NHLRC1Q6VVB1 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
NHLRC1Q6VVB1 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NHLRC1Q6VVB1 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
NHLRC1Q6VVB1 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC18.35■□□□□ 0.53
NHLRC1Q6VVB1 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
NHLRC1Q6VVB1 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
NHLRC1Q6VVB1 SAPCD2P1-201ENST00000395413 1184 ntBASIC18.35■□□□□ 0.53
NHLRC1Q6VVB1 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
NHLRC1Q6VVB1 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
NHLRC1Q6VVB1 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
NHLRC1Q6VVB1 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
NHLRC1Q6VVB1 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC18.35■□□□□ 0.53
NHLRC1Q6VVB1 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NHLRC1Q6VVB1 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
NHLRC1Q6VVB1 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
NHLRC1Q6VVB1 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC18.35■□□□□ 0.53
NHLRC1Q6VVB1 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
NHLRC1Q6VVB1 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NHLRC1Q6VVB1 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NHLRC1Q6VVB1 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
NHLRC1Q6VVB1 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC18.34■□□□□ 0.53
NHLRC1Q6VVB1 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NHLRC1Q6VVB1 STAC-204ENST00000457375 1366 ntTSL 2 BASIC18.34■□□□□ 0.53
NHLRC1Q6VVB1 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC18.34■□□□□ 0.53
NHLRC1Q6VVB1 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NHLRC1Q6VVB1 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC18.34■□□□□ 0.53
NHLRC1Q6VVB1 FEM1AP1-201ENST00000431297 1995 ntBASIC18.34■□□□□ 0.53
NHLRC1Q6VVB1 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NHLRC1Q6VVB1 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
NHLRC1Q6VVB1 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC18.34■□□□□ 0.53
NHLRC1Q6VVB1 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
NHLRC1Q6VVB1 PLLP-204ENST00000569059 665 ntTSL 3 BASIC18.34■□□□□ 0.53
NHLRC1Q6VVB1 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
NHLRC1Q6VVB1 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC18.34■□□□□ 0.53
NHLRC1Q6VVB1 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
NHLRC1Q6VVB1 AC092437.1-201ENST00000624794 1048 ntBASIC18.34■□□□□ 0.53
NHLRC1Q6VVB1 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NHLRC1Q6VVB1 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NHLRC1Q6VVB1 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC18.34■□□□□ 0.53
NHLRC1Q6VVB1 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
NHLRC1Q6VVB1 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC18.34■□□□□ 0.53
NHLRC1Q6VVB1 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
NHLRC1Q6VVB1 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
NHLRC1Q6VVB1 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NHLRC1Q6VVB1 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
NHLRC1Q6VVB1 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
NHLRC1Q6VVB1 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
NHLRC1Q6VVB1 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
NHLRC1Q6VVB1 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
NHLRC1Q6VVB1 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC18.33■□□□□ 0.53
NHLRC1Q6VVB1 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
NHLRC1Q6VVB1 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
NHLRC1Q6VVB1 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
NHLRC1Q6VVB1 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC18.33■□□□□ 0.52
NHLRC1Q6VVB1 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.52
NHLRC1Q6VVB1 CNN2P6-201ENST00000439038 900 ntBASIC18.33■□□□□ 0.52
NHLRC1Q6VVB1 AC007322.4-201ENST00000509611 723 ntBASIC18.33■□□□□ 0.52
NHLRC1Q6VVB1 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC18.33■□□□□ 0.52
NHLRC1Q6VVB1 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC18.33■□□□□ 0.52
NHLRC1Q6VVB1 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
NHLRC1Q6VVB1 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC18.33■□□□□ 0.52
NHLRC1Q6VVB1 AC011767.1-201ENST00000617410 1153 ntBASIC18.33■□□□□ 0.52
NHLRC1Q6VVB1 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
NHLRC1Q6VVB1 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
NHLRC1Q6VVB1 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
NHLRC1Q6VVB1 BID-203ENST00000399765 1879 ntTSL 2 BASIC18.33■□□□□ 0.52
NHLRC1Q6VVB1 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC18.32■□□□□ 0.52
NHLRC1Q6VVB1 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC18.32■□□□□ 0.52
NHLRC1Q6VVB1 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
NHLRC1Q6VVB1 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC18.32■□□□□ 0.52
NHLRC1Q6VVB1 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
NHLRC1Q6VVB1 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms