Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CDH6P55285 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CDH6P55285 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
CDH6P55285 HSCB-202ENST00000398941 955 ntTSL 2 BASIC21.29■■□□□ 1
CDH6P55285 KRT18P11-201ENST00000435214 1283 ntBASIC21.29■■□□□ 1
CDH6P55285 AC010536.3-201ENST00000620306 533 ntBASIC21.29■■□□□ 1
CDH6P55285 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
CDH6P55285 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC21.29■■□□□ 1
CDH6P55285 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
CDH6P55285 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CDH6P55285 AC020907.5-201ENST00000624372 1936 ntBASIC21.28■■□□□ 1
CDH6P55285 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
CDH6P55285 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC21.28■■□□□ 1
CDH6P55285 AC016769.1-201ENST00000409132 1010 ntBASIC21.28■■□□□ 1
CDH6P55285 TERF1P5-201ENST00000477545 1207 ntBASIC21.28■■□□□ 1
CDH6P55285 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC21.28■■□□□ 1
CDH6P55285 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC21.28■■□□□ 1
CDH6P55285 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
CDH6P55285 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC21.28■■□□□ 1
CDH6P55285 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
CDH6P55285 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CDH6P55285 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
CDH6P55285 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CDH6P55285 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC21.28■■□□□ 1
CDH6P55285 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC21.28■■□□□ 1
CDH6P55285 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
CDH6P55285 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
CDH6P55285 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC21.27■■□□□ 1
CDH6P55285 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
CDH6P55285 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC21.27■■□□□ 1
CDH6P55285 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
CDH6P55285 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC21.27■■□□□ 1
CDH6P55285 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC21.27■■□□□ 1
CDH6P55285 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
CDH6P55285 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
CDH6P55285 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC21.27■■□□□ 1
CDH6P55285 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
CDH6P55285 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC21.27■■□□□ 1
CDH6P55285 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
CDH6P55285 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC21.27■■□□□ 1
CDH6P55285 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
CDH6P55285 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC21.27■■□□□ 1
CDH6P55285 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC21.27■□□□□ 0.99
CDH6P55285 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDH6P55285 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CDH6P55285 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDH6P55285 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDH6P55285 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CDH6P55285 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CDH6P55285 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
CDH6P55285 BMP1-204ENST00000397814 836 ntTSL 4 BASIC21.26■□□□□ 0.99
CDH6P55285 UQCRFS1P1-201ENST00000435169 820 ntBASIC21.26■□□□□ 0.99
CDH6P55285 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CDH6P55285 CDV3P1-201ENST00000471403 739 ntBASIC21.26■□□□□ 0.99
CDH6P55285 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CDH6P55285 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CDH6P55285 WWOX-218ENST00000627394 894 ntTSL 5 BASIC21.26■□□□□ 0.99
CDH6P55285 MIR2861-201ENST00000636310 90 ntBASIC21.26■□□□□ 0.99
CDH6P55285 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDH6P55285 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC21.26■□□□□ 0.99
CDH6P55285 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
CDH6P55285 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDH6P55285 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDH6P55285 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDH6P55285 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDH6P55285 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDH6P55285 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CDH6P55285 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC21.25■□□□□ 0.99
CDH6P55285 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC21.25■□□□□ 0.99
CDH6P55285 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDH6P55285 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDH6P55285 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDH6P55285 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CDH6P55285 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC21.25■□□□□ 0.99
CDH6P55285 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC21.24■□□□□ 0.99
CDH6P55285 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC21.24■□□□□ 0.99
CDH6P55285 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC21.24■□□□□ 0.99
CDH6P55285 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDH6P55285 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
CDH6P55285 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC21.24■□□□□ 0.99
CDH6P55285 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDH6P55285 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
CDH6P55285 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC21.24■□□□□ 0.99
CDH6P55285 PARL-206ENST00000435888 1098 ntTSL 5 BASIC21.24■□□□□ 0.99
CDH6P55285 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC21.24■□□□□ 0.99
CDH6P55285 MFSD11-216ENST00000590393 1141 ntBASIC21.24■□□□□ 0.99
CDH6P55285 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDH6P55285 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDH6P55285 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDH6P55285 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDH6P55285 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.24■□□□□ 0.99
CDH6P55285 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDH6P55285 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC21.23■□□□□ 0.99
CDH6P55285 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CDH6P55285 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
CDH6P55285 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDH6P55285 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDH6P55285 SAPCD2P1-201ENST00000395413 1184 ntBASIC21.23■□□□□ 0.99
CDH6P55285 AC006015.1-201ENST00000429970 570 ntBASIC21.23■□□□□ 0.99
CDH6P55285 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms