Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
MSH6P52701 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC28.6■■■□□ 2.17
MSH6P52701 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC28.6■■■□□ 2.17
MSH6P52701 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
MSH6P52701 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC28.6■■■□□ 2.17
MSH6P52701 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
MSH6P52701 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC28.6■■■□□ 2.17
MSH6P52701 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC28.6■■■□□ 2.17
MSH6P52701 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC28.6■■■□□ 2.17
MSH6P52701 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
MSH6P52701 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC28.6■■■□□ 2.17
MSH6P52701 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC28.6■■■□□ 2.17
MSH6P52701 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC28.6■■■□□ 2.17
MSH6P52701 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC28.6■■■□□ 2.17
MSH6P52701 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
MSH6P52701 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
MSH6P52701 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC28.59■■■□□ 2.17
MSH6P52701 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC28.59■■■□□ 2.17
MSH6P52701 KRT18P22-201ENST00000402024 1347 ntBASIC28.59■■■□□ 2.17
MSH6P52701 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC28.59■■■□□ 2.17
MSH6P52701 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC28.59■■■□□ 2.17
MSH6P52701 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
MSH6P52701 SLC25A3P1-201ENST00000443844 931 ntBASIC28.59■■■□□ 2.17
MSH6P52701 FDX2-207ENST00000494368 584 ntTSL 4 BASIC28.59■■■□□ 2.17
MSH6P52701 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC28.59■■■□□ 2.17
MSH6P52701 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC28.59■■■□□ 2.17
MSH6P52701 USF2-205ENST00000594064 1179 ntTSL 2 BASIC28.59■■■□□ 2.17
MSH6P52701 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC28.58■■■□□ 2.17
MSH6P52701 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC28.58■■■□□ 2.17
MSH6P52701 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC28.58■■■□□ 2.17
MSH6P52701 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
MSH6P52701 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC28.58■■■□□ 2.17
MSH6P52701 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
MSH6P52701 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC28.58■■■□□ 2.17
MSH6P52701 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
MSH6P52701 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC28.58■■■□□ 2.17
MSH6P52701 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC28.58■■■□□ 2.17
MSH6P52701 NAPSB-206ENST00000562112 1266 ntBASIC28.58■■■□□ 2.17
MSH6P52701 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC28.58■■■□□ 2.17
MSH6P52701 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC28.58■■■□□ 2.17
MSH6P52701 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
MSH6P52701 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC28.58■■■□□ 2.17
MSH6P52701 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC28.57■■■□□ 2.16
MSH6P52701 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC28.57■■■□□ 2.16
MSH6P52701 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC28.57■■■□□ 2.16
MSH6P52701 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
MSH6P52701 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC28.57■■■□□ 2.16
MSH6P52701 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC28.57■■■□□ 2.16
MSH6P52701 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
MSH6P52701 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC28.57■■■□□ 2.16
MSH6P52701 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
MSH6P52701 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
MSH6P52701 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
MSH6P52701 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
MSH6P52701 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
MSH6P52701 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC28.56■■■□□ 2.16
MSH6P52701 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC28.56■■■□□ 2.16
MSH6P52701 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
MSH6P52701 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
MSH6P52701 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC28.56■■■□□ 2.16
MSH6P52701 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
MSH6P52701 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC28.56■■■□□ 2.16
MSH6P52701 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC28.56■■■□□ 2.16
MSH6P52701 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC28.56■■■□□ 2.16
MSH6P52701 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
MSH6P52701 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
MSH6P52701 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
MSH6P52701 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC28.55■■■□□ 2.16
MSH6P52701 NARF-205ENST00000412079 1760 ntTSL 5 BASIC28.55■■■□□ 2.16
MSH6P52701 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC28.55■■■□□ 2.16
MSH6P52701 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
MSH6P52701 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
MSH6P52701 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC28.55■■■□□ 2.16
MSH6P52701 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
MSH6P52701 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
MSH6P52701 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC28.55■■■□□ 2.16
MSH6P52701 PGM5P4-201ENST00000421970 445 ntBASIC28.55■■■□□ 2.16
MSH6P52701 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC28.55■■■□□ 2.16
MSH6P52701 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC28.55■■■□□ 2.16
MSH6P52701 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC28.55■■■□□ 2.16
MSH6P52701 AL121829.2-201ENST00000620908 328 ntBASIC28.55■■■□□ 2.16
MSH6P52701 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC28.55■■■□□ 2.16
MSH6P52701 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC28.55■■■□□ 2.16
MSH6P52701 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
MSH6P52701 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC28.55■■■□□ 2.16
MSH6P52701 LTK-203ENST00000453182 2412 ntTSL 2 BASIC28.55■■■□□ 2.16
MSH6P52701 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
MSH6P52701 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
MSH6P52701 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC28.54■■■□□ 2.16
MSH6P52701 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC28.54■■■□□ 2.16
MSH6P52701 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC28.54■■■□□ 2.16
MSH6P52701 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC28.54■■■□□ 2.16
MSH6P52701 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC28.54■■■□□ 2.16
MSH6P52701 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC28.54■■■□□ 2.16
MSH6P52701 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC28.54■■■□□ 2.16
MSH6P52701 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC28.54■■■□□ 2.16
MSH6P52701 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
MSH6P52701 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC28.54■■■□□ 2.16
MSH6P52701 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
MSH6P52701 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC28.54■■■□□ 2.16
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms