Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC16.59■□□□□ 0.25
CDX1P47902 AC137761.2-201ENST00000561729 223 ntBASIC16.59■□□□□ 0.25
CDX1P47902 AC145350.3-201ENST00000569033 163 ntBASIC16.59■□□□□ 0.25
CDX1P47902 KRT18P61-201ENST00000585825 1298 ntBASIC16.59■□□□□ 0.25
CDX1P47902 AC092437.1-201ENST00000624794 1048 ntBASIC16.59■□□□□ 0.25
CDX1P47902 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDX1P47902 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDX1P47902 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC16.59■□□□□ 0.25
CDX1P47902 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDX1P47902 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
CDX1P47902 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
CDX1P47902 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDX1P47902 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDX1P47902 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDX1P47902 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CDX1P47902 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CDX1P47902 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC16.58■□□□□ 0.25
CDX1P47902 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
CDX1P47902 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
CDX1P47902 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC16.58■□□□□ 0.25
CDX1P47902 AFG3L1P-217ENST00000557444 2447 ntBASIC16.58■□□□□ 0.25
CDX1P47902 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
CDX1P47902 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CDX1P47902 ME3-201ENST00000323418 1068 ntTSL 5 BASIC16.58■□□□□ 0.24
CDX1P47902 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CDX1P47902 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CDX1P47902 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC16.58■□□□□ 0.24
CDX1P47902 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CDX1P47902 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC16.58■□□□□ 0.24
CDX1P47902 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CDX1P47902 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
CDX1P47902 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CDX1P47902 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC16.58■□□□□ 0.24
CDX1P47902 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
CDX1P47902 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CDX1P47902 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CDX1P47902 AL158211.5-201ENST00000623583 2518 ntBASIC16.58■□□□□ 0.24
CDX1P47902 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CDX1P47902 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDX1P47902 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDX1P47902 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDX1P47902 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDX1P47902 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDX1P47902 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CDX1P47902 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDX1P47902 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDX1P47902 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
CDX1P47902 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC16.57■□□□□ 0.24
CDX1P47902 HSCB-202ENST00000398941 955 ntTSL 2 BASIC16.57■□□□□ 0.24
CDX1P47902 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC16.57■□□□□ 0.24
CDX1P47902 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC16.57■□□□□ 0.24
CDX1P47902 AC006015.1-201ENST00000429970 570 ntBASIC16.57■□□□□ 0.24
CDX1P47902 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC16.57■□□□□ 0.24
CDX1P47902 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC16.57■□□□□ 0.24
CDX1P47902 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC16.57■□□□□ 0.24
CDX1P47902 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
CDX1P47902 DBI-210ENST00000542275 757 ntTSL 5 BASIC16.57■□□□□ 0.24
CDX1P47902 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
CDX1P47902 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
CDX1P47902 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDX1P47902 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CDX1P47902 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDX1P47902 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC16.57■□□□□ 0.24
CDX1P47902 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDX1P47902 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDX1P47902 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDX1P47902 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDX1P47902 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDX1P47902 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC16.56■□□□□ 0.24
CDX1P47902 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDX1P47902 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC16.56■□□□□ 0.24
CDX1P47902 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDX1P47902 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDX1P47902 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDX1P47902 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CDX1P47902 STX7-201ENST00000367937 1090 ntTSL 5 BASIC16.56■□□□□ 0.24
CDX1P47902 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDX1P47902 AC004911.1-201ENST00000416316 871 ntBASIC16.56■□□□□ 0.24
CDX1P47902 KRT18P11-201ENST00000435214 1283 ntBASIC16.56■□□□□ 0.24
CDX1P47902 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
CDX1P47902 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDX1P47902 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDX1P47902 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDX1P47902 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDX1P47902 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC16.56■□□□□ 0.24
CDX1P47902 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CDX1P47902 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CDX1P47902 AP006587.3-201ENST00000525742 1516 ntBASIC16.55■□□□□ 0.24
CDX1P47902 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDX1P47902 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC16.55■□□□□ 0.24
CDX1P47902 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDX1P47902 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDX1P47902 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDX1P47902 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDX1P47902 GAS2L1P2-201ENST00000436355 1356 ntBASIC16.55■□□□□ 0.24
CDX1P47902 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC16.55■□□□□ 0.24
CDX1P47902 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC16.55■□□□□ 0.24
CDX1P47902 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC16.55■□□□□ 0.24
CDX1P47902 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDX1P47902 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms