Protein–RNA interactions for Protein: P31275

HOXC12, Homeobox protein Hox-C12, humanhuman

Predictions only

Length 282 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC12P31275 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC18.13■□□□□ 0.49
HOXC12P31275 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.13■□□□□ 0.49
HOXC12P31275 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HOXC12P31275 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HOXC12P31275 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC18.13■□□□□ 0.49
HOXC12P31275 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
HOXC12P31275 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
HOXC12P31275 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HOXC12P31275 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HOXC12P31275 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HOXC12P31275 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HOXC12P31275 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HOXC12P31275 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
HOXC12P31275 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
HOXC12P31275 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HOXC12P31275 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC18.12■□□□□ 0.49
HOXC12P31275 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HOXC12P31275 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC18.12■□□□□ 0.49
HOXC12P31275 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HOXC12P31275 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
HOXC12P31275 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC18.12■□□□□ 0.49
HOXC12P31275 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC18.12■□□□□ 0.49
HOXC12P31275 AC091799.1-201ENST00000422823 811 ntBASIC18.12■□□□□ 0.49
HOXC12P31275 DUSP5P2-201ENST00000426873 1033 ntBASIC18.12■□□□□ 0.49
HOXC12P31275 AC098590.1-201ENST00000468126 897 ntBASIC18.12■□□□□ 0.49
HOXC12P31275 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC18.12■□□□□ 0.49
HOXC12P31275 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC18.12■□□□□ 0.49
HOXC12P31275 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC18.12■□□□□ 0.49
HOXC12P31275 MARS-234ENST00000630571 216 ntTSL 5 BASIC18.12■□□□□ 0.49
HOXC12P31275 MARS-235ENST00000630803 183 ntTSL 3 BASIC18.12■□□□□ 0.49
HOXC12P31275 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
HOXC12P31275 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HOXC12P31275 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC18.12■□□□□ 0.49
HOXC12P31275 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC18.12■□□□□ 0.49
HOXC12P31275 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
HOXC12P31275 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HOXC12P31275 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HOXC12P31275 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HOXC12P31275 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC18.11■□□□□ 0.49
HOXC12P31275 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC18.11■□□□□ 0.49
HOXC12P31275 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HOXC12P31275 FAM21FP-204ENST00000608637 956 ntBASIC18.11■□□□□ 0.49
HOXC12P31275 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC18.11■□□□□ 0.49
HOXC12P31275 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
HOXC12P31275 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HOXC12P31275 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC18.11■□□□□ 0.49
HOXC12P31275 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
HOXC12P31275 MKRN4P-201ENST00000444706 1521 ntBASIC18.11■□□□□ 0.49
HOXC12P31275 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
HOXC12P31275 AC116050.2-201ENST00000612102 1779 ntBASIC18.11■□□□□ 0.49
HOXC12P31275 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HOXC12P31275 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
HOXC12P31275 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
HOXC12P31275 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HOXC12P31275 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HOXC12P31275 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HOXC12P31275 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HOXC12P31275 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
HOXC12P31275 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HOXC12P31275 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HOXC12P31275 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HOXC12P31275 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
HOXC12P31275 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC18.1■□□□□ 0.49
HOXC12P31275 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
HOXC12P31275 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC18.1■□□□□ 0.49
HOXC12P31275 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC18.1■□□□□ 0.49
HOXC12P31275 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HOXC12P31275 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HOXC12P31275 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
HOXC12P31275 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HOXC12P31275 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HOXC12P31275 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
HOXC12P31275 IRX5-204ENST00000560154 879 ntTSL 5 BASIC18.1■□□□□ 0.49
HOXC12P31275 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HOXC12P31275 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HOXC12P31275 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
HOXC12P31275 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
HOXC12P31275 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
HOXC12P31275 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HOXC12P31275 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC18.09■□□□□ 0.49
HOXC12P31275 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
HOXC12P31275 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HOXC12P31275 LINC00565-201ENST00000562710 2331 ntBASIC18.09■□□□□ 0.49
HOXC12P31275 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HOXC12P31275 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HOXC12P31275 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
HOXC12P31275 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC18.09■□□□□ 0.49
HOXC12P31275 GCSHP5-201ENST00000443090 522 ntBASIC18.09■□□□□ 0.49
HOXC12P31275 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC18.09■□□□□ 0.49
HOXC12P31275 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC18.09■□□□□ 0.49
HOXC12P31275 RARRES2P4-201ENST00000514074 484 ntBASIC18.09■□□□□ 0.49
HOXC12P31275 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HOXC12P31275 PLLP-204ENST00000569059 665 ntTSL 3 BASIC18.09■□□□□ 0.49
HOXC12P31275 AC016405.3-201ENST00000607710 860 ntBASIC18.09■□□□□ 0.49
HOXC12P31275 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.09■□□□□ 0.49
HOXC12P31275 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HOXC12P31275 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HOXC12P31275 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
HOXC12P31275 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
HOXC12P31275 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms