Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC18.73■□□□□ 0.59
MSX1P28360 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC18.73■□□□□ 0.59
MSX1P28360 MIR4758-201ENST00000577688 71 ntBASIC18.73■□□□□ 0.59
MSX1P28360 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC18.73■□□□□ 0.59
MSX1P28360 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC18.73■□□□□ 0.59
MSX1P28360 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
MSX1P28360 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC18.73■□□□□ 0.59
MSX1P28360 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
MSX1P28360 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC18.73■□□□□ 0.59
MSX1P28360 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
MSX1P28360 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
MSX1P28360 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC18.73■□□□□ 0.59
MSX1P28360 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
MSX1P28360 AC006128.1-201ENST00000624704 1661 ntBASIC18.73■□□□□ 0.59
MSX1P28360 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
MSX1P28360 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
MSX1P28360 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.72■□□□□ 0.59
MSX1P28360 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
MSX1P28360 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
MSX1P28360 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
MSX1P28360 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
MSX1P28360 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
MSX1P28360 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC18.72■□□□□ 0.59
MSX1P28360 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC18.72■□□□□ 0.59
MSX1P28360 VMO1-204ENST00000441199 741 ntTSL 2 BASIC18.72■□□□□ 0.59
MSX1P28360 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC18.72■□□□□ 0.59
MSX1P28360 AC016405.3-201ENST00000607710 860 ntBASIC18.72■□□□□ 0.59
MSX1P28360 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
MSX1P28360 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC18.72■□□□□ 0.59
MSX1P28360 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC18.72■□□□□ 0.59
MSX1P28360 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
MSX1P28360 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC18.72■□□□□ 0.59
MSX1P28360 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC18.72■□□□□ 0.59
MSX1P28360 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
MSX1P28360 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
MSX1P28360 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
MSX1P28360 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
MSX1P28360 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
MSX1P28360 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
MSX1P28360 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.71■□□□□ 0.59
MSX1P28360 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
MSX1P28360 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
MSX1P28360 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSX1P28360 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSX1P28360 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSX1P28360 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSX1P28360 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
MSX1P28360 AL512625.2-201ENST00000417533 625 ntBASIC18.71■□□□□ 0.59
MSX1P28360 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC18.71■□□□□ 0.59
MSX1P28360 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
MSX1P28360 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSX1P28360 PLK5-205ENST00000642079 1969 ntBASIC18.71■□□□□ 0.59
MSX1P28360 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
MSX1P28360 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSX1P28360 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
MSX1P28360 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC18.71■□□□□ 0.59
MSX1P28360 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
MSX1P28360 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSX1P28360 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC18.71■□□□□ 0.58
MSX1P28360 AC027702.1-201ENST00000563810 1770 ntBASIC18.7■□□□□ 0.58
MSX1P28360 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MSX1P28360 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC18.7■□□□□ 0.58
MSX1P28360 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
MSX1P28360 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MSX1P28360 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MSX1P28360 PGM5P4-201ENST00000421970 445 ntBASIC18.7■□□□□ 0.58
MSX1P28360 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
MSX1P28360 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC18.7■□□□□ 0.58
MSX1P28360 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC18.7■□□□□ 0.58
MSX1P28360 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
MSX1P28360 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSX1P28360 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSX1P28360 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC18.69■□□□□ 0.58
MSX1P28360 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC18.69■□□□□ 0.58
MSX1P28360 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSX1P28360 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
MSX1P28360 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSX1P28360 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC18.69■□□□□ 0.58
MSX1P28360 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSX1P28360 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
MSX1P28360 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC18.69■□□□□ 0.58
MSX1P28360 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC18.69■□□□□ 0.58
MSX1P28360 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC18.69■□□□□ 0.58
MSX1P28360 POU5F1P3-201ENST00000428824 1078 ntBASIC18.69■□□□□ 0.58
MSX1P28360 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
MSX1P28360 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSX1P28360 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC18.69■□□□□ 0.58
MSX1P28360 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
MSX1P28360 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSX1P28360 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
MSX1P28360 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
MSX1P28360 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSX1P28360 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
MSX1P28360 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSX1P28360 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSX1P28360 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSX1P28360 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC18.69■□□□□ 0.58
MSX1P28360 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSX1P28360 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSX1P28360 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms