Protein–RNA interactions for Protein: P12035

KRT3, Keratin, type II cytoskeletal 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT3P12035 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
KRT3P12035 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
KRT3P12035 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC21.56■■□□□ 1.04
KRT3P12035 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC21.56■■□□□ 1.04
KRT3P12035 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC21.56■■□□□ 1.04
KRT3P12035 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
KRT3P12035 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
KRT3P12035 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC21.55■■□□□ 1.04
KRT3P12035 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
KRT3P12035 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC21.55■■□□□ 1.04
KRT3P12035 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
KRT3P12035 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
KRT3P12035 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC21.55■■□□□ 1.04
KRT3P12035 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC21.55■■□□□ 1.04
KRT3P12035 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC21.55■■□□□ 1.04
KRT3P12035 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC21.55■■□□□ 1.04
KRT3P12035 AC011767.1-201ENST00000617410 1153 ntBASIC21.55■■□□□ 1.04
KRT3P12035 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC21.55■■□□□ 1.04
KRT3P12035 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC21.55■■□□□ 1.04
KRT3P12035 AP005212.1-201ENST00000581547 1997 ntBASIC21.55■■□□□ 1.04
KRT3P12035 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC21.55■■□□□ 1.04
KRT3P12035 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
KRT3P12035 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
KRT3P12035 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC21.55■■□□□ 1.04
KRT3P12035 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
KRT3P12035 AL121603.2-201ENST00000557373 2117 ntBASIC21.55■■□□□ 1.04
KRT3P12035 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
KRT3P12035 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
KRT3P12035 LINC01521-201ENST00000504184 1943 ntBASIC21.55■■□□□ 1.04
KRT3P12035 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
KRT3P12035 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
KRT3P12035 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
KRT3P12035 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
KRT3P12035 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
KRT3P12035 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC21.54■■□□□ 1.04
KRT3P12035 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21.54■■□□□ 1.04
KRT3P12035 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
KRT3P12035 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC21.54■■□□□ 1.04
KRT3P12035 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC21.54■■□□□ 1.04
KRT3P12035 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
KRT3P12035 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
KRT3P12035 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC21.54■■□□□ 1.04
KRT3P12035 AC007322.4-201ENST00000509611 723 ntBASIC21.54■■□□□ 1.04
KRT3P12035 DUX4L16-201ENST00000555130 1264 ntBASIC21.54■■□□□ 1.04
KRT3P12035 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC21.54■■□□□ 1.04
KRT3P12035 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC21.54■■□□□ 1.04
KRT3P12035 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
KRT3P12035 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC21.54■■□□□ 1.04
KRT3P12035 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
KRT3P12035 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC21.54■■□□□ 1.04
KRT3P12035 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
KRT3P12035 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC21.54■■□□□ 1.04
KRT3P12035 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
KRT3P12035 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC21.54■■□□□ 1.04
KRT3P12035 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.54■■□□□ 1.04
KRT3P12035 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC21.54■■□□□ 1.04
KRT3P12035 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT3P12035 AC092667.1-201ENST00000434301 2586 ntBASIC21.53■■□□□ 1.04
KRT3P12035 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT3P12035 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT3P12035 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT3P12035 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC21.53■■□□□ 1.04
KRT3P12035 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
KRT3P12035 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC21.53■■□□□ 1.04
KRT3P12035 BID-214ENST00000617586 542 ntTSL 5 BASIC21.53■■□□□ 1.04
KRT3P12035 MIR2861-201ENST00000636310 90 ntBASIC21.53■■□□□ 1.04
KRT3P12035 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT3P12035 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
KRT3P12035 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT3P12035 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
KRT3P12035 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
KRT3P12035 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
KRT3P12035 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC21.52■■□□□ 1.04
KRT3P12035 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC21.52■■□□□ 1.04
KRT3P12035 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
KRT3P12035 GABARAPL3-202ENST00000624044 1851 ntBASIC21.52■■□□□ 1.04
KRT3P12035 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
KRT3P12035 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
KRT3P12035 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
KRT3P12035 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC21.52■■□□□ 1.04
KRT3P12035 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC21.52■■□□□ 1.04
KRT3P12035 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC21.52■■□□□ 1.04
KRT3P12035 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
KRT3P12035 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
KRT3P12035 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC21.52■■□□□ 1.04
KRT3P12035 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
KRT3P12035 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
KRT3P12035 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
KRT3P12035 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.03
KRT3P12035 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
KRT3P12035 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
KRT3P12035 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
KRT3P12035 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
KRT3P12035 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC21.51■■□□□ 1.03
KRT3P12035 GAS2L1P2-201ENST00000436355 1356 ntBASIC21.51■■□□□ 1.03
KRT3P12035 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
KRT3P12035 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
KRT3P12035 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
KRT3P12035 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC21.51■■□□□ 1.03
KRT3P12035 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms