Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC9.24□□□□□ -0.93
USH2AO75445 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
USH2AO75445 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
USH2AO75445 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
USH2AO75445 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
USH2AO75445 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC9.24□□□□□ -0.93
USH2AO75445 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC9.24□□□□□ -0.93
USH2AO75445 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC9.24□□□□□ -0.93
USH2AO75445 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC9.24□□□□□ -0.93
USH2AO75445 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
USH2AO75445 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
USH2AO75445 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
USH2AO75445 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
USH2AO75445 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
USH2AO75445 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
USH2AO75445 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC9.23□□□□□ -0.93
USH2AO75445 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC9.23□□□□□ -0.93
USH2AO75445 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC9.23□□□□□ -0.93
USH2AO75445 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
USH2AO75445 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC9.23□□□□□ -0.93
USH2AO75445 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
USH2AO75445 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC9.23□□□□□ -0.93
USH2AO75445 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC9.23□□□□□ -0.93
USH2AO75445 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
USH2AO75445 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC9.23□□□□□ -0.93
USH2AO75445 UNC93B7-201ENST00000509439 705 ntBASIC9.23□□□□□ -0.93
USH2AO75445 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
USH2AO75445 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC9.23□□□□□ -0.93
USH2AO75445 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
USH2AO75445 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC9.23□□□□□ -0.93
USH2AO75445 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
USH2AO75445 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC9.23□□□□□ -0.93
USH2AO75445 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
USH2AO75445 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC9.23□□□□□ -0.93
USH2AO75445 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC9.23□□□□□ -0.93
USH2AO75445 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
USH2AO75445 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC9.23□□□□□ -0.93
USH2AO75445 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC9.23□□□□□ -0.93
USH2AO75445 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC9.23□□□□□ -0.93
USH2AO75445 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC9.23□□□□□ -0.93
USH2AO75445 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
USH2AO75445 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
USH2AO75445 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC9.23□□□□□ -0.93
USH2AO75445 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC9.23□□□□□ -0.93
USH2AO75445 AC091390.4-202ENST00000476426 537 ntBASIC9.23□□□□□ -0.93
USH2AO75445 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC9.23□□□□□ -0.93
USH2AO75445 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC9.23□□□□□ -0.93
USH2AO75445 DBP-204ENST00000599385 709 ntTSL 3 BASIC9.23□□□□□ -0.93
USH2AO75445 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC9.23□□□□□ -0.93
USH2AO75445 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC9.22□□□□□ -0.93
USH2AO75445 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
USH2AO75445 PTPA-214ENST00000423100 988 ntTSL 2 BASIC9.22□□□□□ -0.93
USH2AO75445 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
USH2AO75445 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC9.22□□□□□ -0.93
USH2AO75445 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
USH2AO75445 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
USH2AO75445 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
USH2AO75445 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC9.22□□□□□ -0.93
USH2AO75445 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
USH2AO75445 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
USH2AO75445 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC9.22□□□□□ -0.93
USH2AO75445 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC9.22□□□□□ -0.93
USH2AO75445 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC9.22□□□□□ -0.93
USH2AO75445 F2R-202ENST00000505600 442 ntTSL 2 BASIC9.22□□□□□ -0.93
USH2AO75445 FAM86EP-206ENST00000510506 987 ntBASIC9.22□□□□□ -0.93
USH2AO75445 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC9.22□□□□□ -0.93
USH2AO75445 AL691432.3-201ENST00000621860 400 ntBASIC9.22□□□□□ -0.93
USH2AO75445 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC9.22□□□□□ -0.93
USH2AO75445 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC9.22□□□□□ -0.93
USH2AO75445 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
USH2AO75445 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
USH2AO75445 AL139125.2-201ENST00000623134 1869 ntBASIC9.22□□□□□ -0.93
USH2AO75445 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
USH2AO75445 ATP5G1P1-201ENST00000448724 379 ntBASIC9.22□□□□□ -0.93
USH2AO75445 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
USH2AO75445 SERP1-205ENST00000487153 657 ntTSL 4 BASIC9.22□□□□□ -0.93
USH2AO75445 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC9.22□□□□□ -0.93
USH2AO75445 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC9.22□□□□□ -0.93
USH2AO75445 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC9.22□□□□□ -0.93
USH2AO75445 SLC25A1P4-201ENST00000567977 778 ntBASIC9.22□□□□□ -0.93
USH2AO75445 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC9.22□□□□□ -0.93
USH2AO75445 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
USH2AO75445 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC9.22□□□□□ -0.93
USH2AO75445 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
USH2AO75445 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
USH2AO75445 AP003733.4-201ENST00000623785 1697 ntBASIC9.22□□□□□ -0.93
USH2AO75445 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
USH2AO75445 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC9.22□□□□□ -0.93
USH2AO75445 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC9.22□□□□□ -0.93
USH2AO75445 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC9.22□□□□□ -0.93
USH2AO75445 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC9.22□□□□□ -0.93
USH2AO75445 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
USH2AO75445 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
USH2AO75445 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC9.21□□□□□ -0.93
USH2AO75445 AC245052.3-201ENST00000450182 901 ntBASIC9.21□□□□□ -0.93
USH2AO75445 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC9.21□□□□□ -0.93
USH2AO75445 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC9.21□□□□□ -0.93
USH2AO75445 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC9.21□□□□□ -0.93
USH2AO75445 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC9.21□□□□□ -0.93
USH2AO75445 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.93
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms