Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
LDB3O75112 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC19.27■□□□□ 0.68
LDB3O75112 AC105036.2-201ENST00000569468 176 ntBASIC19.27■□□□□ 0.68
LDB3O75112 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC19.27■□□□□ 0.68
LDB3O75112 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LDB3O75112 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC19.27■□□□□ 0.68
LDB3O75112 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LDB3O75112 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LDB3O75112 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
LDB3O75112 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.27■□□□□ 0.67
LDB3O75112 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
LDB3O75112 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
LDB3O75112 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
LDB3O75112 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
LDB3O75112 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.27■□□□□ 0.67
LDB3O75112 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LDB3O75112 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LDB3O75112 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LDB3O75112 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.26■□□□□ 0.67
LDB3O75112 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LDB3O75112 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LDB3O75112 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LDB3O75112 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.26■□□□□ 0.67
LDB3O75112 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
LDB3O75112 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC19.26■□□□□ 0.67
LDB3O75112 METTL15-202ENST00000403099 795 ntTSL 5 BASIC19.26■□□□□ 0.67
LDB3O75112 MAP2K4P1-201ENST00000438453 1195 ntBASIC19.26■□□□□ 0.67
LDB3O75112 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LDB3O75112 AF201337.1-201ENST00000520239 748 ntBASIC19.26■□□□□ 0.67
LDB3O75112 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC19.26■□□□□ 0.67
LDB3O75112 AC133552.2-202ENST00000575694 574 ntBASIC19.26■□□□□ 0.67
LDB3O75112 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC19.26■□□□□ 0.67
LDB3O75112 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.26■□□□□ 0.67
LDB3O75112 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LDB3O75112 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.26■□□□□ 0.67
LDB3O75112 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LDB3O75112 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LDB3O75112 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
LDB3O75112 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.26■□□□□ 0.67
LDB3O75112 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
LDB3O75112 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LDB3O75112 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LDB3O75112 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LDB3O75112 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
LDB3O75112 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.25■□□□□ 0.67
LDB3O75112 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LDB3O75112 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
LDB3O75112 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LDB3O75112 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.25■□□□□ 0.67
LDB3O75112 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LDB3O75112 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC19.25■□□□□ 0.67
LDB3O75112 AC083906.2-201ENST00000511578 360 ntBASIC19.25■□□□□ 0.67
LDB3O75112 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC19.25■□□□□ 0.67
LDB3O75112 AL121832.2-201ENST00000610979 668 ntBASIC19.25■□□□□ 0.67
LDB3O75112 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LDB3O75112 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LDB3O75112 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
LDB3O75112 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.25■□□□□ 0.67
LDB3O75112 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC19.25■□□□□ 0.67
LDB3O75112 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
LDB3O75112 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LDB3O75112 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.24■□□□□ 0.67
LDB3O75112 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LDB3O75112 CYP21A1P-202ENST00000354927 1481 ntBASIC19.24■□□□□ 0.67
LDB3O75112 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
LDB3O75112 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
LDB3O75112 AC007225.1-201ENST00000566331 1836 ntBASIC19.24■□□□□ 0.67
LDB3O75112 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LDB3O75112 NCF1B-203ENST00000435988 1254 ntBASIC19.24■□□□□ 0.67
LDB3O75112 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC19.24■□□□□ 0.67
LDB3O75112 OAS3-207ENST00000551007 998 ntTSL 2 BASIC19.24■□□□□ 0.67
LDB3O75112 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LDB3O75112 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LDB3O75112 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
LDB3O75112 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC19.24■□□□□ 0.67
LDB3O75112 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
LDB3O75112 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LDB3O75112 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC19.24■□□□□ 0.67
LDB3O75112 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LDB3O75112 AC010980.2-201ENST00000587099 1412 ntBASIC19.24■□□□□ 0.67
LDB3O75112 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.24■□□□□ 0.67
LDB3O75112 AL121603.2-201ENST00000557373 2117 ntBASIC19.24■□□□□ 0.67
LDB3O75112 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
LDB3O75112 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.23■□□□□ 0.67
LDB3O75112 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
LDB3O75112 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LDB3O75112 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
LDB3O75112 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
LDB3O75112 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
LDB3O75112 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.23■□□□□ 0.67
LDB3O75112 AL355472.2-201ENST00000422958 438 ntBASIC19.23■□□□□ 0.67
LDB3O75112 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.23■□□□□ 0.67
LDB3O75112 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LDB3O75112 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
LDB3O75112 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LDB3O75112 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC19.23■□□□□ 0.67
LDB3O75112 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
LDB3O75112 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LDB3O75112 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LDB3O75112 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms