Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC19.05■□□□□ 0.64
PRKNO60260 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.05■□□□□ 0.64
PRKNO60260 CYP2T3P-201ENST00000601990 817 ntBASIC19.05■□□□□ 0.64
PRKNO60260 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.05■□□□□ 0.64
PRKNO60260 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PRKNO60260 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
PRKNO60260 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PRKNO60260 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PRKNO60260 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.05■□□□□ 0.64
PRKNO60260 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
PRKNO60260 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PRKNO60260 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PRKNO60260 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PRKNO60260 CYP21A1P-202ENST00000354927 1481 ntBASIC19.04■□□□□ 0.64
PRKNO60260 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.04■□□□□ 0.64
PRKNO60260 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
PRKNO60260 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC19.04■□□□□ 0.64
PRKNO60260 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC19.04■□□□□ 0.64
PRKNO60260 PPP1R14BP2-201ENST00000426284 444 ntBASIC19.04■□□□□ 0.64
PRKNO60260 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19.04■□□□□ 0.64
PRKNO60260 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC19.04■□□□□ 0.64
PRKNO60260 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC19.04■□□□□ 0.64
PRKNO60260 AC100791.3-201ENST00000617619 330 ntBASIC19.04■□□□□ 0.64
PRKNO60260 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
PRKNO60260 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PRKNO60260 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PRKNO60260 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.04■□□□□ 0.64
PRKNO60260 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.04■□□□□ 0.64
PRKNO60260 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PRKNO60260 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PRKNO60260 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PRKNO60260 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
PRKNO60260 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.03■□□□□ 0.64
PRKNO60260 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
PRKNO60260 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PRKNO60260 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PRKNO60260 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PRKNO60260 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
PRKNO60260 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC19.03■□□□□ 0.64
PRKNO60260 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PRKNO60260 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC19.03■□□□□ 0.64
PRKNO60260 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
PRKNO60260 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
PRKNO60260 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC19.03■□□□□ 0.64
PRKNO60260 MIR4758-201ENST00000577688 71 ntBASIC19.03■□□□□ 0.64
PRKNO60260 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC19.03■□□□□ 0.64
PRKNO60260 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC19.03■□□□□ 0.64
PRKNO60260 AC092118.2-201ENST00000613495 667 ntBASIC19.03■□□□□ 0.64
PRKNO60260 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
PRKNO60260 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
PRKNO60260 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC19.02■□□□□ 0.64
PRKNO60260 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.02■□□□□ 0.64
PRKNO60260 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
PRKNO60260 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
PRKNO60260 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
PRKNO60260 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PRKNO60260 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
PRKNO60260 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PRKNO60260 MCRIP2P1-201ENST00000394346 511 ntBASIC19.02■□□□□ 0.64
PRKNO60260 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PRKNO60260 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PRKNO60260 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC19.02■□□□□ 0.64
PRKNO60260 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC19.02■□□□□ 0.64
PRKNO60260 AC133041.1-202ENST00000642053 222 ntBASIC19.02■□□□□ 0.64
PRKNO60260 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PRKNO60260 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
PRKNO60260 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC19.02■□□□□ 0.63
PRKNO60260 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
PRKNO60260 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
PRKNO60260 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
PRKNO60260 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.02■□□□□ 0.63
PRKNO60260 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.63
PRKNO60260 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.01■□□□□ 0.63
PRKNO60260 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC19.01■□□□□ 0.63
PRKNO60260 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PRKNO60260 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PRKNO60260 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
PRKNO60260 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.01■□□□□ 0.63
PRKNO60260 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
PRKNO60260 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
PRKNO60260 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
PRKNO60260 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC19.01■□□□□ 0.63
PRKNO60260 AC073210.2-201ENST00000430369 194 ntBASIC19.01■□□□□ 0.63
PRKNO60260 OR2A1-AS1-201ENST00000462305 773 ntBASIC19.01■□□□□ 0.63
PRKNO60260 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC19.01■□□□□ 0.63
PRKNO60260 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC19.01■□□□□ 0.63
PRKNO60260 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PRKNO60260 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
PRKNO60260 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.01■□□□□ 0.63
PRKNO60260 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.01■□□□□ 0.63
PRKNO60260 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.01■□□□□ 0.63
PRKNO60260 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.01■□□□□ 0.63
PRKNO60260 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
PRKNO60260 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PRKNO60260 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC19■□□□□ 0.63
PRKNO60260 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19■□□□□ 0.63
PRKNO60260 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19■□□□□ 0.63
PRKNO60260 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
PRKNO60260 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PRKNO60260 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms