Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC20.93■□□□□ 0.94
CBX4O00257 AL137060.1-201ENST00000618151 2648 ntBASIC20.93■□□□□ 0.94
CBX4O00257 PLK5-205ENST00000642079 1969 ntBASIC20.93■□□□□ 0.94
CBX4O00257 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.93■□□□□ 0.94
CBX4O00257 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
CBX4O00257 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
CBX4O00257 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
CBX4O00257 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CBX4O00257 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.92■□□□□ 0.94
CBX4O00257 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CBX4O00257 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CBX4O00257 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
CBX4O00257 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CBX4O00257 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CBX4O00257 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CBX4O00257 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CBX4O00257 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CBX4O00257 KRT18P68-201ENST00000392293 1000 ntBASIC20.92■□□□□ 0.94
CBX4O00257 PPP1R14BP2-201ENST00000426284 444 ntBASIC20.92■□□□□ 0.94
CBX4O00257 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.92■□□□□ 0.94
CBX4O00257 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.92■□□□□ 0.94
CBX4O00257 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC20.92■□□□□ 0.94
CBX4O00257 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC20.92■□□□□ 0.94
CBX4O00257 AC092118.2-201ENST00000613495 667 ntBASIC20.92■□□□□ 0.94
CBX4O00257 AC133041.1-202ENST00000642053 222 ntBASIC20.92■□□□□ 0.94
CBX4O00257 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
CBX4O00257 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CBX4O00257 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.92■□□□□ 0.94
CBX4O00257 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.92■□□□□ 0.94
CBX4O00257 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CBX4O00257 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CBX4O00257 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CBX4O00257 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
CBX4O00257 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC20.91■□□□□ 0.94
CBX4O00257 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.91■□□□□ 0.94
CBX4O00257 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC20.91■□□□□ 0.94
CBX4O00257 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CBX4O00257 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CBX4O00257 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
CBX4O00257 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CBX4O00257 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.91■□□□□ 0.94
CBX4O00257 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.91■□□□□ 0.94
CBX4O00257 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CBX4O00257 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CBX4O00257 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CBX4O00257 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC20.91■□□□□ 0.94
CBX4O00257 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CBX4O00257 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.9■□□□□ 0.94
CBX4O00257 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.9■□□□□ 0.94
CBX4O00257 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CBX4O00257 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
CBX4O00257 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CBX4O00257 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.9■□□□□ 0.94
CBX4O00257 GCK-205ENST00000437084 1385 ntTSL 5 BASIC20.9■□□□□ 0.94
CBX4O00257 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CBX4O00257 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CBX4O00257 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
CBX4O00257 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CBX4O00257 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
CBX4O00257 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.9■□□□□ 0.94
CBX4O00257 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC20.9■□□□□ 0.94
CBX4O00257 RGMA-211ENST00000557420 989 ntTSL 3 BASIC20.9■□□□□ 0.94
CBX4O00257 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.9■□□□□ 0.94
CBX4O00257 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
CBX4O00257 AL589743.5-201ENST00000616611 1050 ntBASIC20.9■□□□□ 0.94
CBX4O00257 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC20.9■□□□□ 0.94
CBX4O00257 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
CBX4O00257 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CBX4O00257 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.9■□□□□ 0.94
CBX4O00257 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CBX4O00257 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CBX4O00257 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CBX4O00257 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CBX4O00257 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.9■□□□□ 0.94
CBX4O00257 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.89■□□□□ 0.94
CBX4O00257 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CBX4O00257 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20.89■□□□□ 0.94
CBX4O00257 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CBX4O00257 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
CBX4O00257 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC20.89■□□□□ 0.93
CBX4O00257 SERPINH1P1-201ENST00000419794 1249 ntBASIC20.89■□□□□ 0.93
CBX4O00257 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC20.89■□□□□ 0.93
CBX4O00257 AC073210.2-201ENST00000430369 194 ntBASIC20.89■□□□□ 0.93
CBX4O00257 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CBX4O00257 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC20.89■□□□□ 0.93
CBX4O00257 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CBX4O00257 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CBX4O00257 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CBX4O00257 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.89■□□□□ 0.93
CBX4O00257 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
CBX4O00257 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CBX4O00257 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.88■□□□□ 0.93
CBX4O00257 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.88■□□□□ 0.93
CBX4O00257 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CBX4O00257 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CBX4O00257 AC087633.2-202ENST00000565166 1439 ntBASIC20.88■□□□□ 0.93
CBX4O00257 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CBX4O00257 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.88■□□□□ 0.93
CBX4O00257 AC027702.1-201ENST00000563810 1770 ntBASIC20.88■□□□□ 0.93
CBX4O00257 OR2A1-AS1-201ENST00000462305 773 ntBASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms