Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 AL136116.3-201ENST00000402907 1138 ntBASIC21.26■□□□□ 0.99
CCDC188H7C350 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC21.26■□□□□ 0.99
CCDC188H7C350 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC21.26■□□□□ 0.99
CCDC188H7C350 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC21.26■□□□□ 0.99
CCDC188H7C350 MIR2861-201ENST00000636310 90 ntBASIC21.26■□□□□ 0.99
CCDC188H7C350 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC188H7C350 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
CCDC188H7C350 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC188H7C350 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC188H7C350 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
CCDC188H7C350 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC188H7C350 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC188H7C350 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
CCDC188H7C350 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC21.25■□□□□ 0.99
CCDC188H7C350 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC188H7C350 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
CCDC188H7C350 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC21.25■□□□□ 0.99
CCDC188H7C350 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC188H7C350 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC188H7C350 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC188H7C350 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC21.25■□□□□ 0.99
CCDC188H7C350 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC21.25■□□□□ 0.99
CCDC188H7C350 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC188H7C350 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC21.25■□□□□ 0.99
CCDC188H7C350 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC188H7C350 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC188H7C350 AL136162.1-201ENST00000607711 1078 ntBASIC21.25■□□□□ 0.99
CCDC188H7C350 RARRES2P11-201ENST00000635158 484 ntBASIC21.25■□□□□ 0.99
CCDC188H7C350 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC188H7C350 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC21.25■□□□□ 0.99
CCDC188H7C350 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
CCDC188H7C350 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC188H7C350 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC188H7C350 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC21.24■□□□□ 0.99
CCDC188H7C350 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC188H7C350 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC188H7C350 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC188H7C350 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC188H7C350 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC188H7C350 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC188H7C350 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC188H7C350 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC21.24■□□□□ 0.99
CCDC188H7C350 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC21.24■□□□□ 0.99
CCDC188H7C350 AC116562.4-201ENST00000641316 2276 ntBASIC21.24■□□□□ 0.99
CCDC188H7C350 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC188H7C350 AC125437.2-201ENST00000625180 2167 ntBASIC21.23■□□□□ 0.99
CCDC188H7C350 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC188H7C350 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC21.23■□□□□ 0.99
CCDC188H7C350 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC188H7C350 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC188H7C350 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC188H7C350 MIR572-201ENST00000384983 95 ntBASIC21.23■□□□□ 0.99
CCDC188H7C350 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC21.23■□□□□ 0.99
CCDC188H7C350 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC188H7C350 GRAMD4P2-201ENST00000423297 1097 ntBASIC21.23■□□□□ 0.99
CCDC188H7C350 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC188H7C350 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC21.23■□□□□ 0.99
CCDC188H7C350 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC188H7C350 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC21.23■□□□□ 0.99
CCDC188H7C350 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
CCDC188H7C350 AC008764.7-201ENST00000593779 1081 ntBASIC21.23■□□□□ 0.99
CCDC188H7C350 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC188H7C350 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC21.23■□□□□ 0.99
CCDC188H7C350 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC188H7C350 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
CCDC188H7C350 AC018445.3-201ENST00000624177 1945 ntBASIC21.23■□□□□ 0.99
CCDC188H7C350 AC135279.3-201ENST00000610945 1311 ntBASIC21.23■□□□□ 0.99
CCDC188H7C350 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC188H7C350 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC188H7C350 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC188H7C350 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC188H7C350 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC21.22■□□□□ 0.99
CCDC188H7C350 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC21.22■□□□□ 0.99
CCDC188H7C350 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC188H7C350 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC188H7C350 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC188H7C350 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC188H7C350 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC21.22■□□□□ 0.99
CCDC188H7C350 AC099791.1-201ENST00000416440 715 ntBASIC21.22■□□□□ 0.99
CCDC188H7C350 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC21.22■□□□□ 0.99
CCDC188H7C350 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC21.22■□□□□ 0.99
CCDC188H7C350 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC21.22■□□□□ 0.99
CCDC188H7C350 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC188H7C350 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
CCDC188H7C350 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC188H7C350 AC087289.5-201ENST00000586076 3175 ntBASIC21.22■□□□□ 0.99
CCDC188H7C350 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC188H7C350 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC188H7C350 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
CCDC188H7C350 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC21.22■□□□□ 0.99
CCDC188H7C350 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC188H7C350 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC21.21■□□□□ 0.99
CCDC188H7C350 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC21.21■□□□□ 0.99
CCDC188H7C350 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC188H7C350 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC21.21■□□□□ 0.99
CCDC188H7C350 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC188H7C350 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC188H7C350 LBX2-AS1-202ENST00000603175 2083 ntBASIC21.21■□□□□ 0.99
CCDC188H7C350 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC188H7C350 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC21.21■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms